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Report for CCDS28621.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28621.1 Public Mus musculus 17 Cyp4f14 23 108 98 CCDS HistoryNCBI Gene:64385Re-query CCDS DB by CCDS ID:28621.1Re-query CCDS DB by GeneID:64385See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 28621.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054174.8 ENSMUSP00000050478.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054174.8Link to Ensembl Protein Viewer:ENSMUSP00000050478.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000054174Re-query CCDS DB by Protein ID:ENSMUSP00000050478
Original member Current member EBI ENSMUST00000179434.7 ENSMUSP00000136139.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179434.7Link to Ensembl Protein Viewer:ENSMUSP00000136139.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179434Re-query CCDS DB by Protein ID:ENSMUSP00000136139
Original member Current member EBI ENSMUST00000235058.1 ENSMUSP00000157006.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235058.1Link to Ensembl Protein Viewer:ENSMUSP00000157006.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235058Re-query CCDS DB by Protein ID:ENSMUSP00000157006
Original member Current member EBI ENSMUST00000234759.1 ENSMUSP00000157036.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234759.1Link to Ensembl Protein Viewer:ENSMUSP00000157036.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234759Re-query CCDS DB by Protein ID:ENSMUSP00000157036
Original member Current member NCBI NM_001204333.1 NP_001191262.1 Accepted alive Link to Nucleotide Sequence:NM_001204333.1Link to Protein Sequence:NP_001191262.1Re-query CCDS DB by Nucleotide ID:NM_001204333Re-query CCDS DB by Protein ID:NP_001191262Link to BLAST:NP_001191262.1
Original member Current member NCBI NM_001204334.1 NP_001191263.1 Accepted alive Link to Nucleotide Sequence:NM_001204334.1Link to Protein Sequence:NP_001191263.1Re-query CCDS DB by Nucleotide ID:NM_001204334Re-query CCDS DB by Protein ID:NP_001191263Link to BLAST:NP_001191263.1
Original member Current member NCBI NM_001204335.1 NP_001191264.1 Accepted alive Link to Nucleotide Sequence:NM_001204335.1Link to Protein Sequence:NP_001191264.1Re-query CCDS DB by Nucleotide ID:NM_001204335Re-query CCDS DB by Protein ID:NP_001191264Link to BLAST:NP_001191264.1
Original member Current member NCBI NM_001204336.1 NP_001191265.1 Accepted alive Link to Nucleotide Sequence:NM_001204336.1Link to Protein Sequence:NP_001191265.1Re-query CCDS DB by Nucleotide ID:NM_001204336Re-query CCDS DB by Protein ID:NP_001191265Link to BLAST:NP_001191265.1
Original member Current member NCBI NM_001357788.1 NP_001344717.1 Accepted alive Link to Nucleotide Sequence:NM_001357788.1Link to Protein Sequence:NP_001344717.1Re-query CCDS DB by Nucleotide ID:NM_001357788Re-query CCDS DB by Protein ID:NP_001344717Link to BLAST:NP_001344717.1
Original member Current member NCBI NM_022434.2 NP_071879.1 Accepted alive Link to Nucleotide Sequence:NM_022434.2Link to Protein Sequence:NP_071879.1Re-query CCDS DB by Nucleotide ID:NM_022434Re-query CCDS DB by Protein ID:NP_071879Link to BLAST:NP_071879.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001191262.1 524 Q9EP75 524 100% 0 0
NP_001191263.1 524 Q9EP75 524 100% 0 0
NP_001191264.1 524 Q9EP75 524 100% 0 0
NP_001191265.1 524 Q9EP75 524 100% 0 0
NP_001344717.1 524 Q9EP75 524 100% 0 0
NP_071879.1 524 Q9EP75 524 100% 0 0

Chromosomal Locations for CCDS 28621.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 32905501 32905678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32906049 32906131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32906289 32906353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32906436 32906569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32907647 32907776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32907970 32908036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32909122 32909392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32911157 32911278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32911439 32911566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32911655 32911708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32914538 32914682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32916688 32916885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1575 nt):
ATGTCACAGCTGAGCCTGTCCTGGTTGGGACTGGGGCCCGAGGTGGCCTTCCCATGGAAGACCCTGCTAC
TGCTTGGGGCCTCCTGGATCCTGGCCCGGATTCTGATCCAGATCTATGCTGCCTATAGGAACTATCGTCA
CCTCCATGGCTTCCCTCAGCCCCCCAAACGGAACTGGCTTATGGGTCACGTGGGCATGGTAACTCCTACA
GAGCAGGGCTTGAAGGAATTGACTCGTTTGGTGGGTACCTACCCCCAAGGTTTTTTGATGTGGATTGGAC
CAATGGTCCCTGTTATTACTCTATGCCATTCTGACATCGTCCGATCTATCCTCAATGCCTCAGCCGCTGT
TGCACTCAAGGATGTGATATTCTACAGCATCCTAAAGCCTTGGCTGGGGGATGGGCTCTTGGTGAGTGCT
GGTGACAAGTGGAGCCGCCATCGTCGCATGCTGACACCCGCTTTCCATTTCAACATCCTGAAGCCCTATG
TGAAGATTTTCAACGATAGCACCAACATCATGCACGCCAAGTGGCAACGGTTGATTTCAGATGGCAGTGC
CCGTCTGGACATGTTTGAGCACGTCAGCCTGATGACTCTGGATAGTCTGCAGAAATGTGTCTTCAGCTTT
GACAGCAACTGTCAGGAGAAGTCCAGTGAATATATTGCTGCCATCCTGGAGCTCAGTGCCCTAGTGGCCA
AAAGGCACCAGCAGCCTTTGATGTTCATGGACCTGCTGTATAATCTCACCCCTGATGGTATGCGCTTCCG
TAAGGCCTGCAACGTGGTGCATGAATTCACTGATGCTGTCATCCGGGAGCGGCACCGCACCCTCCCAGAT
CAGGGTTTGGATGACTTCCTTAAGTCTAAGGCCAAGTCCAAGACTTTGGATTTCATTGATGTGCTGCTGC
TGAGCAAGGATGAAGATGGAAAGGAGCTGTCAGATGAGGACATCCGAGCAGAGGCTGACACCTTCATGTT
TGAGGGCCATGACACGACAGCCAGTGGACTCTCCTGGATCCTCTACAACCTGGCAAGGCACCCAGAATAC
CAGGAGCGCTGCCGGCAGGAAGTTCAGGAGCTGCTGAGGGGCCGAGAGCCTGAGGAGATTGAATGGGACG
ACCTGGCCCAGCTACCCTTCCTGACCATGTGCATCAAGGAGAGTCTGCGACTGCATCCCCCAGTCACGGT
CATCTCCCGATGCTGCACCCAGGACATTCTGCTCCCAGATGGCCGGACCATTCCCAAAGGTATCATCTGT
CTCATCAGCATCTTTGGAATTCATCACAACCCATCCGTGTGGCCAGACCCTGAGGTCTATGACCCCTTCC
GCTTTGACCCTGAAAACATCAAAGACAGCTCACCTCTGGCATTTATTCCCTTCTCGGCGGGACCCAGGAA
CTGCATAGGACAGACTTTCGCCATGAGTGAGATGAAGGTGGCACTGGCGCTGACGCTGCTGCGCTTCCGA
CTCCTACCGGATGACAAGGAGCCGCGCAGGCAGCCAGAGCTGATCCTGCGCGCAGAGGGCGGGCTGTGGC
TGCGGGTGGAGCCGCTGAGCGCGGGCGCTCATTGA

Translation (524 aa):
MSQLSLSWLGLGPEVAFPWKTLLLLGASWILARILIQIYAAYRNYRHLHGFPQPPKRNWLMGHVGMVTPT
EQGLKELTRLVGTYPQGFLMWIGPMVPVITLCHSDIVRSILNASAAVALKDVIFYSILKPWLGDGLLVSA
GDKWSRHRRMLTPAFHFNILKPYVKIFNDSTNIMHAKWQRLISDGSARLDMFEHVSLMTLDSLQKCVFSF
DSNCQEKSSEYIAAILELSALVAKRHQQPLMFMDLLYNLTPDGMRFRKACNVVHEFTDAVIRERHRTLPD
QGLDDFLKSKAKSKTLDFIDVLLLSKDEDGKELSDEDIRAEADTFMFEGHDTTASGLSWILYNLARHPEY
QERCRQEVQELLRGREPEEIEWDDLAQLPFLTMCIKESLRLHPPVTVISRCCTQDILLPDGRTIPKGIIC
LISIFGIHHNPSVWPDPEVYDPFRFDPENIKDSSPLAFIPFSAGPRNCIGQTFAMSEMKVALALTLLRFR
LLPDDKEPRRQPELILRAEGGLWLRVEPLSAGAH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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