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Report for CCDS2866.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2866.1 Public Homo sapiens 3 STIMATE 24 110 108 CCDS HistoryNCBI Gene:375346Re-query CCDS DB by CCDS ID:2866.1Re-query CCDS DB by GeneID:375346See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2866.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355083.11 ENSP00000347195.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000355083.11Link to Ensembl Protein Viewer:ENSP00000347195.5Re-query CCDS DB by Nucleotide ID:ENST00000355083Re-query CCDS DB by Protein ID:ENSP00000347195
Original member Current member NCBI NM_198563.5 NP_940965.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198563.5Link to Protein Sequence:NP_940965.1Re-query CCDS DB by Nucleotide ID:NM_198563Re-query CCDS DB by Protein ID:NP_940965Link to BLAST:NP_940965.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940965.1 294 Q86TL2 294 100% 0 0

Chromosomal Locations for CCDS 2866.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 52840494 52840610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52842811 52842960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52843721 52843798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52844829 52844941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52849792 52849913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52852603 52852698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52855396 52855444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52897291 52897450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (885 nt):
ATGCAGGGCCCCGCCGGGAACGCGAGCCGGGGACTGCCAGGCGGGCCGCCCTCCACAGTCGCGTCCGGGG
CGGGCCGCTGCGAGAGCGGCGCGCTCATGCACAGCTTCGGCATCTTCCTGCAGGGGCTGCTCGGCGTCGT
GGCCTTCAGCACGTTAATGCTCAAACGCTTCAGAGAACCAAAGCATGAAAGACGTCCGTGGAGGATATGG
TTTTTAGACACTTCCAAACAAGCCATAGGAATGCTGTTCATCCACTTTGCAAATGTATACCTAGCAGATC
TCACTGAAGAGGACCCTTGTTCACTGTACCTCATCAACTTCCTCCTGGACGCCACTGTGGGCATGCTGCT
CATCTACGTGGGGGTGCGCGCCGTCAGCGTCCTGGTAGAGTGGCAGCAGTGGGAGTCCCTGCGCTTCGGC
GAATATGGAGACCCTCTGCAGTGTGGAGCCTGGGTCGGGCAGTGCGCTCTTTACATCGTGATCATGATTT
TTGAAAAGTCTGTCGTCTTCATCGTCCTCCTAATACTTCAGTGGAAAAAGGTGGCCCTGTTGAATCCCAT
TGAAAACCCAGACTTGAAGCTGGCCATCGTCATGCTGATCGTCCCCTTCTTTGTCAACGCTTTGATGTTT
TGGGTAGTGGACAATTTCCTCATGAGAAAGGGGAAGACGAAAGCTAAGCTAGAAGAAAGGGGAGCCAACC
AGGACTCGAGGAATGGGAGCAAGGTCCGCTACCGGAGGGCCGCATCCCACGAGGAGTCTGAGTCTGAGAT
CCTGATCTCAGCGGATGATGAGATGGAGGAGTCCGACGTGGAGGAGGACCTCCGCAGACTGACCCCCCTC
AAGCCTGTGAAGAAAAAGAAGCACCGCTTTGGGCTACCCGTATGA

Translation (294 aa):
MQGPAGNASRGLPGGPPSTVASGAGRCESGALMHSFGIFLQGLLGVVAFSTLMLKRFREPKHERRPWRIW
FLDTSKQAIGMLFIHFANVYLADLTEEDPCSLYLINFLLDATVGMLLIYVGVRAVSVLVEWQQWESLRFG
EYGDPLQCGAWVGQCALYIVIMIFEKSVVFIVLLILQWKKVALLNPIENPDLKLAIVMLIVPFFVNALMF
WVVDNFLMRKGKTKAKLEERGANQDSRNGSKVRYRRAASHEESESEILISADDEMEESDVEEDLRRLTPL
KPVKKKKHRFGLPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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