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Report for CCDS28822.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28822.1 Public Mus musculus 17 Polh 23 108 98 CCDS HistoryNCBI Gene:80905Re-query CCDS DB by CCDS ID:28822.1Re-query CCDS DB by GeneID:80905See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28822.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024749.8 ENSMUSP00000024749.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024749.8Link to Ensembl Protein Viewer:ENSMUSP00000024749.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000024749Re-query CCDS DB by Protein ID:ENSMUSP00000024749
Original member Current member NCBI NM_030715.4 NP_109640.1 Accepted alive Link to Nucleotide Sequence:NM_030715.4Link to Protein Sequence:NP_109640.1Re-query CCDS DB by Nucleotide ID:NM_030715Re-query CCDS DB by Protein ID:NP_109640Link to BLAST:NP_109640.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_109640.1 694 Q9JJN0 694 100% 0 0

Chromosomal Locations for CCDS 28822.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 46172253 46173096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46175151 46175320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46181466 46181531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46182685 46182808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46184690 46184809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46188027 46188130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46190607 46190776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46194202 46194416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46198634 46198768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46199392 46199528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2085 nt):
ATGGCTCCTGGGCAGAATCGAGTGGTTGCTCTTGTAGACATGGACTGCTTTTTTGTACAAGTGGAACAGC
GGCAAAATCCTCATTTGAGGAATAAACCTTGTGCAGTTGTACAGTACAAATCATGGAAAGGTGGTGGAAT
TATTGCAGTTAGCTATGAAGCCCGAGCATTTGGTGTCACTAGAAACATGTGGGCGGATGATGCTAAGAAG
TTATGTCCAGATCTTCTCCTGGCACAAGTTCGTGAGTCCCGTGGAAAAGCTAACCTCACCAAGTACCGGG
AAGCTAGTGTTGAAGTGATGGAGATAATGTCTTATTTTGCTGTGATTGAACGTGCCAGCATCGATGAGGC
TTATATAGATTTGACCAGTGCTGTACAAGAAAGACTTCAAAAGTTACAAGGTCAGCCTATCTCAGCAGAT
TTGCTGCCAAGCACTTACATTGAAGGGTTGCCCCGAGGCCCTACAGTAGAAGAGACTGTTCAGAAAGAGG
CTATTCGGAAACAAGGCTTGCTTCAGTGGCTTGATTCTCTTCAGAGTGATGATCCCACCTCTCCAGACCT
CAGGCTGACTGTGGGAGCCATGATTGTGGAAGAAATGAGAGCAGCCATAGAGAGTAAGACTGGCTTCCAG
TGTTCAGCTGGAATCTCACACAATAAGGTCCTGGCAAAACTTGCTTGTGGACTAAATAAGCCCAACCGCC
AAACCCTGGTCTCACATGGGTCAGTGCCACAGCTCTTCAGCCAGATGCCAATCCGTAAAATCCGAAGTCT
TGGAGGAAAGCTAGGGGCTTCTGTCATTGAAGTCCTTGGGATAGAATACATGGGTGACCTGACCCAGTTC
ACTGAATCCCAGCTCCAGAGTCATTTTGGAGAGAAGAATGGGTCTTGGCTGTATGCCATGTGTCGAGGTA
TTGAACACGATCCAGTTAAACCCAGGCAGTTACCTAAAACTATTGGCTGCAGCAAGAACTTCCCAGGGAA
AACAGCTCTGGCTACTCGGGAGCAGGTACAGTGGTGGCTTTTGCAGTTAGCTCTGGAACTTGAGGAGAGG
CTAACCAAAGATCGAAATGATAATGACCGCGTGGCCACTCAGCTGGTCGTCAGTATTCGTTTTCAGGGAG
ACAGGCGTCTCAGCAGCCTGCGGCGGTGCTGTGCCCTCCCTCGCTATGACGCTCACAAGATGAGCCAGGA
CGCATTTGCTGCCATCAGGAACTGTAATACATCTGGAATCCAAACTGAGTGGTCCCCTCCTCTCACAATG
CTCTTCCTCTGCGCTACCAAGTTCTCTGCGGCTGCCCCTCCAGCTTGCACGGATATCACTGCGTTCCTGA
GTAGCGACTCAAGTTGTCAGCCAAAGGTGCCAATTGCCAGCTCTGAGACTAGGACCCAGGGGTCTGGCCC
AGCTGTACCAACCTCTAAAGAGGCAGCCACATCTCTAGCGTCTTTTTTTCAAAAAGCTGCCAAAAAGCAG
AGAATGAAAGAGACTTCCTTTGTACCTCTTAACACAGCCACAGAGAAGTTATCATCCAAGCCTTCACTTG
TGTTCCAAAGCAGCCAAACCACAGGAAGTCAGTCTTTCTTTAAGCAGAAGAGCCTGCTGCTCCAGCACAC
ACAGCTTAGTAACTCTGCGGCTCCTGACCCTCCACAGGCCAGCCCTGCAGCGCAACCAAGCTGTCTGCCA
GCAGAGTGTGTAGACAGTGGTCCTGATGATGGAGCGGTGAAGCCAGTATCCTCTAAAGCAGTGTCTACAG
AAATGAATGTGGCTGGGGACAGTCCAAACGTGCTCGATTCTCCAGCTTACAACTCTCAGGAGGTGACCCA
AAGGGCCACTGAGGACCAAGTGCTCTGTGAGAAGTGTGACTCCCTGGTTCCAGTGTGGGACATGCCAGAA
CACACGGACTACCATTTTGCATTGGAGTTGCAGAAGTCTTTTTTGCAGCCTTGTACTTCAAAACCCCAGG
CTATTCCTGCCGTGTCTCCTCAGGGCAAAAGAAATCCCAAGAGTCCCTCGGCTTCCAGTAGTAAGCGCCT
TAGGCCCCATGGCATGCAGACGCTGGAATCGTTTTTTAAGCCACTGACACATTAG

Translation (694 aa):
MAPGQNRVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRNMWADDAKK
LCPDLLLAQVRESRGKANLTKYREASVEVMEIMSYFAVIERASIDEAYIDLTSAVQERLQKLQGQPISAD
LLPSTYIEGLPRGPTVEETVQKEAIRKQGLLQWLDSLQSDDPTSPDLRLTVGAMIVEEMRAAIESKTGFQ
CSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEVLGIEYMGDLTQF
TESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLALELEER
LTKDRNDNDRVATQLVVSIRFQGDRRLSSLRRCCALPRYDAHKMSQDAFAAIRNCNTSGIQTEWSPPLTM
LFLCATKFSAAAPPACTDITAFLSSDSSCQPKVPIASSETRTQGSGPAVPTSKEAATSLASFFQKAAKKQ
RMKETSFVPLNTATEKLSSKPSLVFQSSQTTGSQSFFKQKSLLLQHTQLSNSAAPDPPQASPAAQPSCLP
AECVDSGPDDGAVKPVSSKAVSTEMNVAGDSPNVLDSPAYNSQEVTQRATEDQVLCEKCDSLVPVWDMPE
HTDYHFALELQKSFLQPCTSKPQAIPAVSPQGKRNPKSPSASSSKRLRPHGMQTLESFFKPLTH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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