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Report for CCDS28854.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28854.1 Public Mus musculus 17 Frs3 23 108 98 CCDS HistoryNCBI Gene:107971Re-query CCDS DB by CCDS ID:28854.1Re-query CCDS DB by GeneID:107971See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28854.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113296.7 ENSMUSP00000108921.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113296.7Link to Ensembl Protein Viewer:ENSMUSP00000108921.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113296Re-query CCDS DB by Protein ID:ENSMUSP00000108921
Original member NCBI NM_144939.2 NP_659188.1 Updated not alive Link to Nucleotide Sequence:NM_144939.2Link to Protein Sequence:NP_659188.1Re-query CCDS DB by Nucleotide ID:NM_144939Re-query CCDS DB by Protein ID:NP_659188
Current member NCBI NM_144939.3 NP_659188.1 Accepted alive Link to Nucleotide Sequence:NM_144939.3Link to Protein Sequence:NP_659188.1Re-query CCDS DB by Nucleotide ID:NM_144939Re-query CCDS DB by Protein ID:NP_659188Link to BLAST:NP_659188.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659188.1 492 Q91WJ0 492 100% 0 0

Chromosomal Locations for CCDS 28854.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 47698596 47698661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47699509 47699695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47701623 47701784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47702570 47702724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47702954 47703862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1479 nt):
ATGGGGAGCTGCTGGAGCTGCCTGGACAGAGACAGCGTGCCGCACAACCACCCTACCAAGTTCAAGGTGA
CCAATGTGGATGATGAAGGGGTGGAGTTGGGCTCGGGGGTGATGGAGCTGACCCAGAGTGAGCTGGTGCT
ACACCTGCACCAGCGGGAAGCTGTCCGCTGGCCCTACCTCTGCCTGCGGCGCTATGGCTACGACTCCAAT
CTCTTCTCCTTTGAGAGTGGCCGCCGCTGTCAGACAGGCCAGGGCATCTTTGCATTCAAGTGTTCGAGGG
CAGAGGACATCTTCAACCTGCTGCAGGACCTCATGCAGTGTAACAGCATCAACGTGACGGAGGAGCCGGT
CATCATCACGCGGAGCAGCCACCCACCAGAGCTGGACCTGCCTCGAGGGCCCCCACAGCCCGCTGGCTAC
ACGGTCTCTGGCTTCTCCAATGGCTTCCCTGGCTGCCCTGGAGAGGGCCCACGGTTCTCCTCCGCACCTC
GCCGACCCTCCACAAGCAGTCTGCGACACCCCTCGCCTGGGGAAGAGTCTACCCACACCCTCATTGCCTC
CGAGGAGCAGTCTCACACCTATGTCAACACACCAACTGGGGATGAGGATGGCAGAAGTCGCCACTGCCTG
CAGCCACTGCCTGAGGGCAGGGTACCCCTCCCAGCACAGACACAGGGTTCCGACCAGCGAGACCCACAGG
TGTTGCTCCAGCCAGGGCAGGTCAAGTTCGTGCTGGGCCCCACCCCTGCTCGGCGGCAGGTGATGAAGTG
CCAGAGCCTCTGCCCGGGCATGCAGGACCCTCCCCATCACAACAACAACGAGGGCCCTTCTGAGTGCCCA
GCCCAGCCCAAATGCACCTACGAGAACGTCAGCGGGGGCCTGCAGCAAGGGGCTGGCTGGAGACTGAGCC
CTGAGGAGCGAGGGTGGAGTGGCCTGGCCCACCGTCGGGCGGCCCTGCTGCACTATGAGAACCTGCCCCC
ACTTCCCCCAGTGTGGGAGAGCCAAGGTCAACAGCCGGGAGGGGAGGCTGGGGATGATGGGGACTCCAGG
GACGGGCTTACCCCGTCCTCAAATGGCTTCCCTGATGGCGAGGAGGATGAAACCCCGCTACAGAAACCCA
CCAGCACGCGGGCCTCCGCCCGTAGCCACAGCGGCTTCCCTGTCCCACTGACCCGCCGACGAGGCTCCCC
GCGGGTCTTCAACTTTGATTTCCGCCGGCAGGGCCCTGAGCCCCCAAGGCAGCTCAACTACATCCAGGTG
GAGCTCAAGGGCTGGGGTACAGCCCGTCCCAAGGGGCCCCAGAACCCCTCAGTGTCTGGAGCTCCTGGGC
CCACCCCACACCCTGTTCGCAGCTCAGACTCGTATGCCGTGATTGACCTCAAGAAAACGGCGGCCATGTC
CGACCTGCAGAGGGCTCTGCCCCGAGATGATGGCGCGGTCAGGAAGACTCGGCACAACAGCACCGACCTG
CCTCTGTAG

Translation (492 aa):
MGSCWSCLDRDSVPHNHPTKFKVTNVDDEGVELGSGVMELTQSELVLHLHQREAVRWPYLCLRRYGYDSN
LFSFESGRRCQTGQGIFAFKCSRAEDIFNLLQDLMQCNSINVTEEPVIITRSSHPPELDLPRGPPQPAGY
TVSGFSNGFPGCPGEGPRFSSAPRRPSTSSLRHPSPGEESTHTLIASEEQSHTYVNTPTGDEDGRSRHCL
QPLPEGRVPLPAQTQGSDQRDPQVLLQPGQVKFVLGPTPARRQVMKCQSLCPGMQDPPHHNNNEGPSECP
AQPKCTYENVSGGLQQGAGWRLSPEERGWSGLAHRRAALLHYENLPPLPPVWESQGQQPGGEAGDDGDSR
DGLTPSSNGFPDGEEDETPLQKPTSTRASARSHSGFPVPLTRRRGSPRVFNFDFRRQGPEPPRQLNYIQV
ELKGWGTARPKGPQNPSVSGAPGPTPHPVRSSDSYAVIDLKKTAAMSDLQRALPRDDGAVRKTRHNSTDL
PL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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