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Report for CCDS28856.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28856.1 Public Mus musculus 17 Tfeb 23 108 98 CCDS HistoryNCBI Gene:21425Re-query CCDS DB by CCDS ID:28856.1Re-query CCDS DB by GeneID:21425See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28856.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024786.13 ENSMUSP00000024786.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024786.13Link to Ensembl Protein Viewer:ENSMUSP00000024786.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000024786Re-query CCDS DB by Protein ID:ENSMUSP00000024786
Original member Current member NCBI NM_011549.3 NP_035679.3 Accepted alive Link to Nucleotide Sequence:NM_011549.3Link to Protein Sequence:NP_035679.3Re-query CCDS DB by Nucleotide ID:NM_011549Re-query CCDS DB by Protein ID:NP_035679Link to BLAST:NP_035679.3

Chromosomal Locations for CCDS 28856.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 47785810 47786196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47786278 47786532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47786931 47787011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47788026 47788146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47788237 47788293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47788909 47788984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47789661 47789808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47791335 47791814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1605 nt):
ATGGCTCAGCTCGCTCAGTGGTCTTGGGCAAATCCCTTCTGCCCGGACTCAGTTTCTCCTTGTGCACAAT
GGGAGCAACCATACTTATGCCAGCCTGTGCTTAAAGACTACGAAGATGATGAATACTTCATGGGCCTGTC
TCCCCTCGACTACAGGGAGCCCGAACCAACAGCTGCCATGGCGTCACGCATCGGGCTGCGCATGCAGCTC
ATGCGGGAGCAGGCCCAGCAGGAGGAGCAGCGAGAGCGCATGCAGCAGCAGGCTGTCATGCATTATATGC
AACAGCAGCAGCAGCAGCAGCAGCAGCTGGGTGGGCCCCCCACCCCAGCCATCAACACCCCTGTCCACTT
CCAGTCGCCCCCGCCTGTGCCCGGGGAGGTGCTGAAGGTGCAGTCCTACCTGGAGAACCCCACCTCCTAC
CACCTGCAACAGTCCCAGCATCAGAAGGTTCGGGAGTATCTGTCTGAGACCTATGGGAACAAGTTTGCTG
CCCACGTGAGCCCAGCCCAAGGTTCCCCGAAGCCTGCCCCAGCAGCATCCCCAGGGGTGCGGGCTGGACA
CGTACTGTCCACCTCGGCCGGCAACAGTGCTCCCAACAGTCCCATGGCCATGCTACATATCAGCTCCAAC
CCCGAGAAAGAGTTTGATGATGTCATTGACAACATTATGCGCCTGGACAGCGTGCTGGGCTACATCAACC
CTGAGATGCAGATGCCTAACACGCTGCCCCTGTCTAGCAGCCACCTGAACGTGTACAGCGGTGACCCCCA
GGTCACAGCCTCCATGGTGGGTGTCACCAGCAGCTCCTGCCCTGCCGACCTGACTCAGAAGCGAGAGCTA
ACAGATGCTGAGAGCAGAGCCCTGGCCAAGGAGCGGCAGAAGAAAGACAATCACAACCTAATTGAGAGAA
GACGCAGGTTCAACATCAATGACCGGATCAAGGAGCTGGGAATGCTGATCCCCAAGGCCAACGACCTGGA
CGTGCGCTGGAACAAAGGCACCATCCTCAAGGCCTCTGTGGATTACATCCGGAGGATGCAGAAGGACCTG
CAGAAGTCCCGGGAGCTGGAGAACCACTCCCGGCGCCTGGAGATGACTAACAAGCAGCTCTGGCTCCGCA
TCCAGGAGCTGGAGATGCAGGCACGCGTGCACGGCCTCCCCACCACCTCGCCGTCGGGTGTGAATATGGC
CGAGCTGGCCCAGCAGGTGGTGAAGCAAGAGTTGCCCAGTGAGGATGGCCCAGGGGAGGCGCTGATGCTG
GGGCCTGAGGTCCCTGAGCCTGAGCAAATGCCGGCTCTTCCTCCCCAGGCTCCGCTGCCCTCGGCCGCCC
AGCCACAGTCTCCGTTCCATCACCTGGACTTCAGCCATGGCCTGAGCTTTGGGGGTGGGGGCGACGAGGG
GCCCACAGGTTACCCCGATACCCTGGGGACAGAGCACGGCTCCCCATTCCCCAACCTGTCCAAGAAGGAT
CTGGACTTAATGCTCCTAGATGACTCCCTGCTCCCCCTGGCCTCTGACCCCCTCTTTTCTACCATGTCTC
CTGAGGCCTCCAAGGCCAGCAGCCGCCGGAGCAGCTTCAGCATGGAGGAGGGTGATGTTCTGTGA

Translation (534 aa):
MAQLAQWSWANPFCPDSVSPCAQWEQPYLCQPVLKDYEDDEYFMGLSPLDYREPEPTAAMASRIGLRMQL
MREQAQQEEQRERMQQQAVMHYMQQQQQQQQQLGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSY
HLQQSQHQKVREYLSETYGNKFAAHVSPAQGSPKPAPAASPGVRAGHVLSTSAGNSAPNSPMAMLHISSN
PEKEFDDVIDNIMRLDSVLGYINPEMQMPNTLPLSSSHLNVYSGDPQVTASMVGVTSSSCPADLTQKREL
TDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDVRWNKGTILKASVDYIRRMQKDL
QKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPTTSPSGVNMAELAQQVVKQELPSEDGPGEALML
GPEVPEPEQMPALPPQAPLPSAAQPQSPFHHLDFSHGLSFGGGGDEGPTGYPDTLGTEHGSPFPNLSKKD
LDLMLLDDSLLPLASDPLFSTMSPEASKASSRRSSFSMEEGDVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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