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Report for CCDS29277.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29277.1 Public Mus musculus 18 Camk2a 23 108 98 CCDS HistoryNCBI Gene:12322Re-query CCDS DB by CCDS ID:29277.1Re-query CCDS DB by GeneID:12322See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29277.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115295.8 ENSMUSP00000110950.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115295.8Link to Ensembl Protein Viewer:ENSMUSP00000110950.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115295Re-query CCDS DB by Protein ID:ENSMUSP00000110950
Original member Current member NCBI NM_009792.3 NP_033922.1 Accepted alive Link to Nucleotide Sequence:NM_009792.3Link to Protein Sequence:NP_033922.1Re-query CCDS DB by Nucleotide ID:NM_009792Re-query CCDS DB by Protein ID:NP_033922Link to BLAST:NP_033922.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033922.1 200 P11798-2 200 100% 0 0

Chromosomal Locations for CCDS 29277.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 60963847 60963963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60969011 60969043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60969994 60970042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60977940 60978015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60980060 60980154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60984326 60984554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60984777 60984780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (603 nt):
ATGCTGCTCTTTCTCACGCTGTGGGCCCTGGTGCCTTGCCTGGTGTTGCTAACCCTCTACTTTCTCTCCT
CCACAGGAGGGAAGAGCGGAGGAAACAAGAAGAACGATGGTGTGAAGAAAAGAAAGTCCAGTTCCAGCGT
TCAGTTAATGGAATCTTCTGAGAGCACCAACACCACCATTGAGGACGAAGACACCAAAGTGCGCAAACAG
GAAATTATCAAAGTGACAGAGCAGCTGATCGAAGCCATAAGCAATGGAGACTTTGAGTCCTACACGAAGA
TGTGCGACCCTGGAATGACAGCCTTTGAACCAGAGGCCCTGGGGAACCTGGTGGAGGGCCTGGACTTTCA
TCGATTCTATTTTGAAAACCTGTGGTCCCGGAACAGCAAGCCCGTGCACACCACCATCCTGAACCCTCAC
ATCCACCTGATGGGTGACGAGTCAGCCTGCATCGCCTATATCCGCATCACTCAGTACCTGGATGCAGGCG
GCATACCCCGCACGGCCCAGTCAGAGGAGACCCGCGTCTGGCACCGCAGGGACGGCAAATGGCAGATCGT
CCACTTCCACAGATCTGGGGCGCCCTCCGTCCTGCCGCATTGA

Translation (200 aa):
MLLFLTLWALVPCLVLLTLYFLSSTGGKSGGNKKNDGVKKRKSSSSVQLMESSESTNTTIEDEDTKVRKQ
EIIKVTEQLIEAISNGDFESYTKMCDPGMTAFEPEALGNLVEGLDFHRFYFENLWSRNSKPVHTTILNPH
IHLMGDESACIAYIRITQYLDAGGIPRTAQSEETRVWHRRDGKWQIVHFHRSGAPSVLPH


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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