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Report for CCDS29315.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29315.1 Public Mus musculus 18 Pmaip1 23 108 98 CCDS HistoryNCBI Gene:58801Re-query CCDS DB by CCDS ID:29315.1Re-query CCDS DB by GeneID:58801See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29315.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025399.8 ENSMUSP00000025399.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025399.8Link to Ensembl Protein Viewer:ENSMUSP00000025399.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000025399Re-query CCDS DB by Protein ID:ENSMUSP00000025399
Original member Current member NCBI NM_021451.2 NP_067426.1 Accepted alive Link to Nucleotide Sequence:NM_021451.2Link to Protein Sequence:NP_067426.1Re-query CCDS DB by Nucleotide ID:NM_021451Re-query CCDS DB by Protein ID:NP_067426Link to BLAST:NP_067426.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067426.1 103 Q9JM54 103 100% 0 0

Chromosomal Locations for CCDS 29315.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 66458761 66458812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 66460843 66460998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 66463270 66463373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (312 nt):
ATGCCCGGGAGAAAGGCGCGTCGGAACGCGCCAGTGAACCCAACGCGGGCAGAGCTACCACCTGAGTTCG
CAGCTCAACTCAGGAAGATCGGAGACAAAGTGTATTGCACGTGGAGTGCACCGGACATAACTGTGGTTCT
GGCGCAGATGCCTGGGAAGTCGCAAAAGAGCAGGATGAGGAGCCCAAGCCCAACCCGGGTGCCAGCAGAC
TTGAAGGACGAGTGTGCTCAACTCCGGAGGATTGGAGACAAAGTGAATTTACGGCAGAAACTTCTGAATT
TGATTTCCAAGCTCTTCAATTTAGTAACCTGA

Translation (103 aa):
MPGRKARRNAPVNPTRAELPPEFAAQLRKIGDKVYCTWSAPDITVVLAQMPGKSQKSRMRSPSPTRVPAD
LKDECAQLRRIGDKVNLRQKLLNLISKLFNLVT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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