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Report for CCDS29321.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29321.1 Public Mus musculus 18 Tubb6 23 108 98 CCDS HistoryNCBI Gene:67951Re-query CCDS DB by CCDS ID:29321.1Re-query CCDS DB by GeneID:67951See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29321.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001513.7 ENSMUSP00000001513.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001513.7Link to Ensembl Protein Viewer:ENSMUSP00000001513.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000001513Re-query CCDS DB by Protein ID:ENSMUSP00000001513
Original member Current member NCBI NM_026473.2 NP_080749.2 Accepted alive Link to Nucleotide Sequence:NM_026473.2Link to Protein Sequence:NP_080749.2Re-query CCDS DB by Nucleotide ID:NM_026473Re-query CCDS DB by Protein ID:NP_080749Link to BLAST:NP_080749.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080749.2 447 Q922F4 447 100% 0 0

Chromosomal Locations for CCDS 29321.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 67390758 67390814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67391325 67391433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67392946 67393056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67401310 67402376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1344 nt):
ATGAGGGAGATTGTGCACATCCAGGCGGGCCAGTGCGGGAACCAGATCGGTACCAAGTTTTGGGAAGTGA
TCAGTGATGAGCACGGCATCGACCAGGCCGGAGGCTACGTGGGCGACTCAGCGCTGCAGCTGGAGAGGAT
CAGCGTCTACTACAATGAGTCATCCTCTAAGAAGTACGTACCCAGGGCTGCCCTGGTGGACTTGGAGCCC
GGCACCATGGACAGTGTGAGGTCTGGGCCTTTTGGGCAACTCTTCCGGCCTGACAACTTCATCTTCGGAC
AGACGGGTGCCGGAAACAACTGGGCCAAGGGTCACTACACGGAGGGCGCGGAGCTGGTGGATTCGGTGCT
GGATGTGGTGCGCAAGGAGTGTGAGCATTGCGACTGTCTTCAGGGCTTCCAGCTCACCCACTCGCTGGGC
GGTGGCACGGGCTCAGGCATGGGCACACTGCTCATCAGCAAGATCCGAGAGGAGTACCCGGACCGCATCA
TGAACACCTTCAGCGTCATGCCGTCACCCAAGGTCTCAGACACCGTGGTGGAGCCCTACAACGCCACATT
GTCAGTGCACCAGCTGGTAGAGAACACCGACGAGACCTACTGCATCGACAACGAGGCCCTCTATGACATC
TGCTTCCGCACGCTCAAGCTGACCACACCCACTTACGGGGACCTCAACCACTTGGTATCCGCCACCATGA
GCGGTGTCACCACATCACTGCGTTTCCCTGGCCAACTCAACGCCGACCTGCGCAAGCTGGCTGTGAACAT
GGTGCCATTCCCACGTCTCCACTTCTTCATGCCCGGCTTTGCCCCCCTCACAGCCCGGGGCAGTCAGCAG
TACCGTGCCCTGACAGTGCCTGAGCTCACACAGCAGATGTTCGATGCCAAGAACATGATGGCTGCCTGTG
ACCCACGCCATGGCCGCTACCTGACCGTCGCCACTGTCTTCCGGGGCCCCATGTCCATGAAGGAGGTGGA
CGAGCAGATGCTGGCCATCCAGAACAAGAACAGCAGCTACTTTGTGGAGTGGATCCCCAACAATGTCAAG
GTAGCTGTGTGCGACATCCCACCACGGGGCCTGAAGATGGCCTCCACCTTCATTGGCAATAGCACTGCCA
TCCAGGAGCTATTCAAGCGCATCTCCGAGCAGTTCTCGGCCATGTTCCGCCGCAAGGCCTTCCTGCACTG
GTTCACCGGTGAGGGCATGGACGAGATGGAGTTCACCGAGGCCGAGAGTAACATGAATGACCTGGTGTCC
GAGTACCAGCAGTACCAGGACGCCACGGTCAATGATGGGGAAGAGGCATTTGAAGACGAGGATGAAGAAG
AGATCAACGAATAG

Translation (447 aa):
MREIVHIQAGQCGNQIGTKFWEVISDEHGIDQAGGYVGDSALQLERISVYYNESSSKKYVPRAALVDLEP
GTMDSVRSGPFGQLFRPDNFIFGQTGAGNNWAKGHYTEGAELVDSVLDVVRKECEHCDCLQGFQLTHSLG
GGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI
CFRTLKLTTPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQ
YRALTVPELTQQMFDAKNMMAACDPRHGRYLTVATVFRGPMSMKEVDEQMLAIQNKNSSYFVEWIPNNVK
VAVCDIPPRGLKMASTFIGNSTAIQELFKRISEQFSAMFRRKAFLHWFTGEGMDEMEFTEAESNMNDLVS
EYQQYQDATVNDGEEAFEDEDEEEINE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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