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Report for CCDS2935.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2935.1 Public Homo sapiens 3 CMSS1 24 110 108 CCDS HistoryNCBI Gene:84319Re-query CCDS DB by CCDS ID:2935.1Re-query CCDS DB by GeneID:84319See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2935.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000421999.8 ENSP00000410396.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000421999.8Link to Ensembl Protein Viewer:ENSP00000410396.2Re-query CCDS DB by Nucleotide ID:ENST00000421999Re-query CCDS DB by Protein ID:ENSP00000410396
Original member Current member NCBI NM_032359.4 NP_115735.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032359.4Link to Protein Sequence:NP_115735.2Re-query CCDS DB by Nucleotide ID:NM_032359Re-query CCDS DB by Protein ID:NP_115735Link to BLAST:NP_115735.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115735.2 279 Q9BQ75-1 279 100% 0 0

Chromosomal Locations for CCDS 2935.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 99817980 99818043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100146973 100147061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100160430 100160501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100162303 100162432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100166335 100166394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100167738 100167840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100171839 100171899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100172316 100172403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100176327 100176415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100178305 100178388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (840 nt):
ATGGCAGACGATCTCGGAGACGAGTGGTGGGAGAACCAGCCGACTGGAGCAGGCAGCAGCCCAGAAGCAT
CAGATGGTGAAGGAGAAGGAGACACAGAAGTGATGCAGCAGGAGACAGTTCCAGTTCCTGTACCTTCAGA
GAAAACCAAACAGCCTAAAGAATGTTTTTTGATACAACCAAAGGAAAGAAAAGAGAATACCACCAAGACC
AGGAAAAGAAGAAAGAAGAAAATTACTGATGTTCTTGCAAAATCAGAACCAAAACCAGGGTTACCTGAAG
ACCTACAGAAGCTGATGAAGGACTATTATAGCAGCAGACGCTTGGTGATTGAATTAGAAGAACTGAACCT
GCCAGACTCCTGTTTCCTCAAGGCCAATGATTTGACTCACAGTCTTTCCTCATACCTAAAAGAAATTTGT
CCTAAGTGGGTAAAACTTAGGAAGAACCACAGTGAGAAGAAATCGGTCCTGATGCTGATCATCTGCAGCT
CGGCCGTCCGAGCCCTGGAGCTCATTAGGTCGATGACAGCATTCAGAGGAGACGGCAAAGTTATAAAATT
ATTTGCAAAGCACATAAAGGTCCAGGCGCAGGTAAAGTTGCTGGAGAAGCGTGTGGTGCACCTGGGTGTA
GGAACTCCGGGGAGAATTAAAGAACTTGTTAAACAAGGTGGCCTTAATTTGAGCCCCTTAAAATTTCTGG
TTTTTGACTGGAACTGGAGAGATCAGAAGTTGAGGAGAATGATGGACATTCCCGAGATAAGAAAGGAGGT
ATTCGAACTTCTGGAAATGGGAGTGCTCAGTCTGTGCAAGTCAGAATCCTTGAAACTGGGCCTTTTCTAA

Translation (279 aa):
MADDLGDEWWENQPTGAGSSPEASDGEGEGDTEVMQQETVPVPVPSEKTKQPKECFLIQPKERKENTTKT
RKRRKKKITDVLAKSEPKPGLPEDLQKLMKDYYSSRRLVIELEELNLPDSCFLKANDLTHSLSSYLKEIC
PKWVKLRKNHSEKKSVLMLIICSSAVRALELIRSMTAFRGDGKVIKLFAKHIKVQAQVKLLEKRVVHLGV
GTPGRIKELVKQGGLNLSPLKFLVFDWNWRDQKLRRMMDIPEIRKEVFELLEMGVLSLCKSESLKLGLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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