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Report for CCDS29411.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29411.1 Public Mus musculus 19 Gstp1 23 108 98 CCDS HistoryNCBI Gene:14870Re-query CCDS DB by CCDS ID:29411.1Re-query CCDS DB by GeneID:14870See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29411.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169613.3 ENSMUSP00000129565.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169613.3Link to Ensembl Protein Viewer:ENSMUSP00000129565.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169613Re-query CCDS DB by Protein ID:ENSMUSP00000129565
Original member Current member NCBI NM_013541.1 NP_038569.1 Accepted alive Link to Nucleotide Sequence:NM_013541.1Link to Protein Sequence:NP_038569.1Re-query CCDS DB by Nucleotide ID:NM_013541Re-query CCDS DB by Protein ID:NP_038569Link to BLAST:NP_038569.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038569.1 210 P19157 210 100% 0 0

Chromosomal Locations for CCDS 29411.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 4035473 4035661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4035824 4035931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4036688 4036791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4037104 4037191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4037290 4037396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4037585 4037620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4037863 4037863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (633 nt):
ATGCCACCATACACCATTGTCTACTTCCCAGTTCGAGGGCGGTGTGAGGCCATGCGAATGCTGCTGGCTG
AC
CAGGGCCAGAGCTGGAAGGAGGAGGTGGTTACCATAGATACCTGGATGCAAGGCTTGCTCAAGCCCAC
T
TGTCTGTATGGGCAGCTCCCCAAGTTTGAGGATGGAGACCTCACCCTTTACCAATCTAATGCCATCTTG
AGA
CACCTTGGCCGCTCTTTGGGGCTTTATGGGAAAAACCAGAGGGAGGCCGCCCAGATGGATATGGTGA
AT
GATGGGGTGGAGGACCTTCGCGGCAAATATGTCACCCTCATCTACACCAACTATGAGAATGGTAAGAA
T
GACTACGTGAAGGCCCTGCCTGGGCATCTGAAGCCTTTTGAGACCCTGCTGTCCCAGAACCAGGGAGGC
AAA
GCTTTCATCGTGGGTGACCAGATCTCCTTTGCCGATTACAACTTGCTGGACCTGCTGCTGATCCACC
AA
GTCCTGGCCCCTGGCTGCCTGGACAACTTCCCCCTGCTCTCTGCCTATGTGGCTCGCCTCAGTGCCCG
G
CCCAAGATCAAGGCCTTTCTGTCCTCCCCGGAACATGTGAACCGTCCCATCAATGGCAATGGCAAACAG
TAG


Translation (210 aa):
MPPYTIVYFPVRGRCEAMRMLLADQGQSWKEEVVTIDTWMQGLLKPTCLYGQLPKFEDGDLTLYQSNAIL
R
HLGRSL
GLYGKNQREAAQMDMVNDGVEDLRGKYVTLIYTNYENGKNDYVKALPGHLKPFETLLSQNQGG
K
AFIVGDQ
ISFADYNLLDLLLIHQVLAPGCLDNFPLLSAYVARLSARPKIKAFLSSPEHVNRPINGNGKQ



Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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