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Report for CCDS29474.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29474.1 Public Mus musculus 19 Sipa1 23 108 98 CCDS HistoryNCBI Gene:20469Re-query CCDS DB by CCDS ID:29474.1Re-query CCDS DB by GeneID:20469See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29474.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071857.12 ENSMUSP00000073618.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071857.12Link to Ensembl Protein Viewer:ENSMUSP00000073618.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000071857Re-query CCDS DB by Protein ID:ENSMUSP00000073618
Original member Current member EBI ENSMUST00000080824.12 ENSMUSP00000079637.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080824.12Link to Ensembl Protein Viewer:ENSMUSP00000079637.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000080824Re-query CCDS DB by Protein ID:ENSMUSP00000079637
Original member Current member EBI ENSMUST00000164304.8 ENSMUSP00000128208.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164304.8Link to Ensembl Protein Viewer:ENSMUSP00000128208.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164304Re-query CCDS DB by Protein ID:ENSMUSP00000128208
Original member Current member EBI ENSMUST00000169854.1 ENSMUSP00000132345.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169854.1Link to Ensembl Protein Viewer:ENSMUSP00000132345.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169854Re-query CCDS DB by Protein ID:ENSMUSP00000132345
Original member Current member EBI ENSMUST00000237874.1 ENSMUSP00000157692.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000237874.1Link to Ensembl Protein Viewer:ENSMUSP00000157692.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000237874Re-query CCDS DB by Protein ID:ENSMUSP00000157692
Original member Current member EBI ENSMUST00000236006.1 ENSMUSP00000158378.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236006.1Link to Ensembl Protein Viewer:ENSMUSP00000158378.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236006Re-query CCDS DB by Protein ID:ENSMUSP00000158378
Original member NCBI NM_001164480.1 NP_001157952.1 Updated not alive Link to Nucleotide Sequence:NM_001164480.1Link to Protein Sequence:NP_001157952.1Re-query CCDS DB by Nucleotide ID:NM_001164480Re-query CCDS DB by Protein ID:NP_001157952
Current member NCBI NM_001164480.2 NP_001157952.1 Accepted alive Link to Nucleotide Sequence:NM_001164480.2Link to Protein Sequence:NP_001157952.1Re-query CCDS DB by Nucleotide ID:NM_001164480Re-query CCDS DB by Protein ID:NP_001157952Link to BLAST:NP_001157952.1
Original member NCBI NM_001164481.1 NP_001157953.1 Updated not alive Link to Nucleotide Sequence:NM_001164481.1Link to Protein Sequence:NP_001157953.1Re-query CCDS DB by Nucleotide ID:NM_001164481Re-query CCDS DB by Protein ID:NP_001157953
Current member NCBI NM_001164481.2 NP_001157953.1 Accepted alive Link to Nucleotide Sequence:NM_001164481.2Link to Protein Sequence:NP_001157953.1Re-query CCDS DB by Nucleotide ID:NM_001164481Re-query CCDS DB by Protein ID:NP_001157953Link to BLAST:NP_001157953.1
Original member NCBI NM_001164482.1 NP_001157954.1 Updated not alive Link to Nucleotide Sequence:NM_001164482.1Link to Protein Sequence:NP_001157954.1Re-query CCDS DB by Nucleotide ID:NM_001164482Re-query CCDS DB by Protein ID:NP_001157954
Current member NCBI NM_001164482.2 NP_001157954.1 Accepted alive Link to Nucleotide Sequence:NM_001164482.2Link to Protein Sequence:NP_001157954.1Re-query CCDS DB by Nucleotide ID:NM_001164482Re-query CCDS DB by Protein ID:NP_001157954Link to BLAST:NP_001157954.1
Original member NCBI NM_001164568.1 NP_001158040.1 Updated not alive Link to Nucleotide Sequence:NM_001164568.1Link to Protein Sequence:NP_001158040.1Re-query CCDS DB by Nucleotide ID:NM_001164568Re-query CCDS DB by Protein ID:NP_001158040
Current member NCBI NM_001164568.2 NP_001158040.1 Accepted alive Link to Nucleotide Sequence:NM_001164568.2Link to Protein Sequence:NP_001158040.1Re-query CCDS DB by Nucleotide ID:NM_001164568Re-query CCDS DB by Protein ID:NP_001158040Link to BLAST:NP_001158040.1
Original member NCBI NM_011379.4 NP_035509.4 Updated not alive Link to Nucleotide Sequence:NM_011379.4Link to Protein Sequence:NP_035509.4Re-query CCDS DB by Nucleotide ID:NM_011379Re-query CCDS DB by Protein ID:NP_035509
Current member NCBI NM_011379.5 NP_035509.4 Accepted alive Link to Nucleotide Sequence:NM_011379.5Link to Protein Sequence:NP_035509.4Re-query CCDS DB by Nucleotide ID:NM_011379Re-query CCDS DB by Protein ID:NP_035509Link to BLAST:NP_035509.4

Chromosomal Locations for CCDS 29474.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 5651416 5651562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5651636 5651714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5651906 5651960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5652045 5652146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5652261 5652369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5652455 5652566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5652655 5652873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5653999 5654273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5654547 5655156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5655258 5655415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5655688 5655791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5656154 5656328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5659334 5659510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5659596 5659723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5660314 5660980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3117 nt):
ATGTGGGCCGGCGGTGTGGGGAGCCCTCGGCGGGGCATGGCCCCTGCACCTACCGATGACCTCTTTGCCC
GTAAGCTTCGCCAACCTGCCCGGCCCCCACTGACACCACATACCTTTGAGCCGAGGCCAGCTCGGGGCCC
ACTCTTGCGCAGTGGCAGTGATGCTGGTGAAGTCCGGCCCCCTACACCAGCCAGCCCCCGTGCCCGTGCC
CACAGCCACGAGGATGCCAGCCGCCCTGCTGCAACCCCTACTCGGCTCTTCACTGACCCACTGGCACTGC
TAGGGTTGCCAGCAGAAGAGCCAGAGCCCACCTTCCCGCCAGTGCTGGAACCCCGGTGGTTTGCTCACTA
TGATGTGCAGAGCTTGCTCTTTGACTGGGCTCCACGACCTCGGGGGACAGGCAGCCATATAGAGGCAAAC
TCTGGGACCTTAGCTGAGGGCCAGACTACCACCTCAGATCTACTGCTCGGGGCACCTGGCTTTGTGAGCG
AGCTTGGTGGTGAGGGTGAGCTAGGGCTGGGTGGGCCAATATCCCCACCTGTGCCCCCTGCACTGCCTAA
TGCGGCTGTGTCCGTCCTGGAGGAGCCACAGACCCGGACCACAGCTTACAGCCTGGAGCACGCAGATCTG
GGTGCAGGCTACTACCGCAAGTACTTCTATGGCAAAGAACACCAGAACTTCTTTGGGCTGGATGAGGCGC
TGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTA
CCGGGTCATCGTGCGGACCACGCAGCTCCGGACCCTCCGTGGCACCATCTCGGAGGACGCACTGCCTCCC
GGCCCCCCGAGGGGCCTATCTCCGAGGAAGCTTCTGGAACATGTGGCTCCACGGCTGAGCCCCACCTGCC
TGCGCCTGGGTTCAGCCTCTCCCAAGGTGCCCCGCACGCTGCTTACTCTGGATGAGCAAGTGCTGAGCTT
CCAACGCAAGGTGGGCATCCTGTACTGCCGCGCAGGCCAGGGCTCTGAGGAAGAGATGTACAACAACCAG
GAGGCCGGAGCAGCCTTTATGCAGTTCCTTACCTTGCTGGGTGATGTGGTGCGACTCAAAGGCTTTGAAA
GTTACCGGGCCCAGCTGGATACCAAAACGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGA
CCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAGCTCCTGAGG
AAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTA
CGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACAC
CTCATACAGGGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGA
GGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGG
CTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTAC
TAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGC
CGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGG
CTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTT
GGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGT
CGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCA
CGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAGCTGGTGAGCCG
CGGGTGTGAGACCAGAGAACTAGCGCTGCCCAGAGATGGCCAAGGTCGCCTGGGCTTCGAGGTGGATGCA
GAAGGCTTCATCACGCACGTGGAGCGCTTCACGTTTGCGGAGACCACGGGGCTTCGGCCTGGAGCTCGTT
TGCTGCGAGTCTGCGGCCAGACGCTGCCCAAGCTGGGTCCCGAAGCTGCTGCCCAGATGCTGCGCTCTGC
GCCCAAGGTCTGCGTCACGGTCCTACCCCCAGACGAGAGCGGCCGGCCGCGAAGGAGCTTTTCGGAGCTC
TATATGCTCTCTCTGAAGGAACCCAGCCGGCGGGGGGGTCCAGAGCCAGTACAGGATGAAACTGGGAAGT
TGGTCATATTGCCTCCCACCAAGCAGCTGCTACATTTTTGCCTGAAAGACAGCAGCAGTCCTCCGGGGCC
TGGGGATCTGACTGAGGAGAGGACAGAGTTCCTGCGCAGCCACAACTCCCTGTCATCTGGAAGCTCCCTG
TCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTG
CACCTGGTACTGACAGAGAAACACCCCCTTCCCAGGACCAGTCAGGAAGCCCCAGTAGCCATGAAGACAC
CAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGT
AAGATTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCA
CTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGGGACAACCCATCTCAGAGAGCGGAGACCCCAAGGA
AGCTTTAAAGTGTGATTCTGAGCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATG
CTCTGGAAGCTCCAGGAGGACCTGCAGAGGGAGAAGGCGGACAGGGCAGCCTTGGAGGAGGAGGTTCGGA
GCCTCAGACACAACAACCAGAGGCTGCTGGCAGAGTCCGAGAGTGCCGCCACCCGCCTGCTCCTGGCCTC
TAAGCATCTGGGTGCACCCACTACTGACCTGGCCTGA

Translation (1038 aa):
MWAGGVGSPRRGMAPAPTDDLFARKLRQPARPPLTPHTFEPRPARGPLLRSGSDAGEVRPPTPASPRARA
HSHEDASRPAATPTRLFTDPLALLGLPAEEPEPTFPPVLEPRWFAHYDVQSLLFDWAPRPRGTGSHIEAN
SGTLAEGQTTTSDLLLGAPGFVSELGGEGELGLGGPISPPVPPALPNAAVSVLEEPQTRTTAYSLEHADL
GAGYYRKYFYGKEHQNFFGLDEALGPVAVSLRREEKEGSGGGTLHSYRVIVRTTQLRTLRGTISEDALPP
GPPRGLSPRKLLEHVAPRLSPTCLRLGSASPKVPRTLLTLDEQVLSFQRKVGILYCRAGQGSEEEMYNNQ
EAGAAFMQFLTLLGDVVRLKGFESYRAQLDTKTDSTGTHSLYTTYQDHEIMFHVSTMLPYTPNNQQQLLR
KRHIGNDIVTIVFQEPGSKPFCPTTIRSHFQHVFLVVRAHAPCTPHTSYRVAVSRTQDTPAFGPALPEGG
GPFAANADFRAFLLAKALNGEQAAGHARQFHAMATRTRQQYLQDLATNEVTTTSLDSASRFGLPSLGGRR
RATPRSPGAELQAAGALMWGVRAAPGARVAAGAETSGPEDAEVPCLLGISAETLVLVAPRDGRVVFNCAC
RDVLAWTFSEHQLDLYHGRGEAITLRLDGAPGQAVGEVVARLQLVSRGCETRELALPRDGQGRLGFEVDA
EGFITHVERFTFAETTGLRPGARLLRVCGQTLPKLGPEAAAQMLRSAPKVCVTVLPPDESGRPRRSFSEL
YMLSLKEPSRRGGPEPVQDETGKLVILPPTKQLLHFCLKDSSSPPGPGDLTEERTEFLRSHNSLSSGSSL
SDEAPVLPNTTPDLLLVTTANPSAPGTDRETPPSQDQSGSPSSHEDTSDSGPELRASILPRTLSLRNSIS
KIMSEAGSETLEDEWQSISEIASTCNTILESLSREGQPISESGDPKEALKCDSEPEPGSLSEKVSHLESM
LWKLQEDLQREKADRAALEEEVRSLRHNNQRLLAESESAATRLLLASKHLGAPTTDLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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