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Report for CCDS29588.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29588.1 Public Mus musculus 19 Slc15a3 23 108 98 CCDS HistoryNCBI Gene:65221Re-query CCDS DB by CCDS ID:29588.1Re-query CCDS DB by GeneID:65221See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29588.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025646.2 ENSMUSP00000025646.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025646.2Link to Ensembl Protein Viewer:ENSMUSP00000025646.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000025646Re-query CCDS DB by Protein ID:ENSMUSP00000025646
Original member Current member NCBI NM_023044.2 NP_075531.2 Accepted alive Link to Nucleotide Sequence:NM_023044.2Link to Protein Sequence:NP_075531.2Re-query CCDS DB by Nucleotide ID:NM_023044Re-query CCDS DB by Protein ID:NP_075531Link to BLAST:NP_075531.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075531.2 578 Q8BPX9 578 100% 0 0

Chromosomal Locations for CCDS 29588.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 10843021 10843578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10848505 10848788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10853129 10853276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10854254 10854361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10854909 10855077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10855888 10856046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10857183 10857338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10857630 10857784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1737 nt):
ATGTCTGCCCCTCGCGCGGAAGAGCAACCAAGCAGGTCCGGAGAGCGACAACCGCTGGTGGCCCGAGGCC
CG
CGGGGACCACGACGGTGGAGACGGACAGCTGCTGCTGCGGTGCTGCTAGTGCAGATGCTGGAACGCGC
T
GCCTTCTTTGGTGTCACCTCCAACCTCGTGCTCTACCTCAACAGCTTGAACTTCAATTGGGACGGCCAA
CAG
GCATCACGGGCCACACTCCTCTTCCTAGGCGCCTCCTACCTGCTGGCTCCAGTGGGGGGCTGGCTGG
CA
GACGTGTACCTGGGACGCTTCCTCACTATCTCGCTCAGCCTGCTGCTCTATCTGGCTGCCTCTGGCTT
G
TTGCTCACCACCATCACCAATGATGGCCGCAGATCCTTCTGTGGAGAGATGCCCGAGTTGCCACTGGAA
CCT
GCCTGCCCATCCTCAAGCTGCCAAGGCTCCTGGTCCAGCCCCTACTGCGCGACCACCCTCTACTTGG
TG
TTGCTGCTCCTGGCCCTGGCTGCCAGCTCCGTCAGGAGCACCCTCACCTCGTTCGGGGCTGACCAGGT
G
ATGGATCTCGGGCGCGATGCCACCCGCCGCTTCTTCAACTGGTTCTATTGGAGCATCAACCTGGGTGCC
ATA
TTGTCCCTGTTGGTGGTGGCTTTCATCGAGCAGAACATCAGCTTCCTATGGGGCTACAGCATCATCG
TG
GGCCTCGTGGGCCTGGCATTCTTCATTTTTCTCTTTGCCACACCAGTCTTCATCACCAAGCCCCCAAC
A
GGCAGCCAAGTGTCATCTATGCTGAAGCTTGCGTTCCAAAACTGCTGTCCCTGCCGGAGGTCCTCTTCC
AG
G
GACTCTGAAAGTGCCCACCTGTTGCCTGACCAGAGGTCTAACCAGCCTGGACCTTCTCCACAAGAAG
AT
ATGGCCAACTTCCAGGTGCTGGTGAAGATCCTGCCTGTGATGGTGACCCTTGTGCCTTATTGGATGGT
A
TATTTCCAGATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACC
AAC
CCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGGATCCCAGAAGCCTGGCTCCTAC
TG
GCCAATGTTGCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGATCCTCTGCTGCTGCG
G
TGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATT
GTG
GCAGGAGTCCTGGAGAAAGAACGCTTACAGTACATTGCTGCCAACCAGACAGTGCCTCAGCTGATTG
GG
AAGGACTTATACTATGCAGCGCCACTGTCTATCTGGTGGCAGATCCCCCAGTACCTGCTCATCGGGGT
C
AGTGAGATCTTTGCCAGCATCCCAGGTCTGGAGTTCGCTTACTCAGAAGCCCCACGCTCCATGCAGGGT
GCA
ATTATGGGCATCTTCTTCTGCCTTTCCGGGGTGGGCTCACTGCTAGGCTCTGGCTTGGTGGCCCTAC
TG
TCTTTTCCTGGGGGCTGGATGTACTGCCCCAAGGACTTTGGGAACATCAACAACTGTCAGATGGACCG
T
TACTTCTTCCTGCTGGCCGGCATTGAGGCTGTCACAGCCGTCCTGTTTCTCTGGATTGCTGGTCGCTAT
GAG
AGGACTCGCCAGGACCCAGCCTCCCAGCGCTCGTCCAGCAGGGTCAGAGGCTAA


Translation (578 aa):
MSAPRAEEQPSRSGERQPLVARGPRGPRRWRRTAAAAVLLVQMLERAAFFGVTSNLVLYLNSLNFNWDGQ
Q
ASRATLLFLGASYLLAPVGGWLADVYLGRFLTISLSLLLYLAASGLLLTTITNDGRRSFCGEMPELPLE
P
ACPSSSCQGSWSSPYCATTLYLVLLLLALAASSVRSTLTSFGADQ
VMDLGRDATRRFFNWFYWSINLGA
I
LSLLVVAFIEQNISFLWGYSIIVGLVGLAFFIFLFATPVFITKPPTGSQVSSMLKLAFQNCCPCRRSSS

R
DSESAHLLPDQRSNQPGPSPQEDMANFQVLVKILPVMVTLVPYWMVYFQMQSTYVLQGLHLHIPNIFRT
N
PNISLLLRSDSSNYR
IPEAWLLLANVAVILILIPVKDHLIDPLLLRCKLLPSSLQKMALGMFFGFTSII
V
A
GVLEKERLQYIAANQTVPQLIGKDLYYAAPLSIWWQIPQYLLIGVSEIFASIPGLEFAYSEAPRSMQG
A
IMGIFFCLSGVGSLLGSGLVALLSFPGGWMYCPKDF
GNINNCQMDRYFFLLAGIEAVTAVLFLWIAGRY
E
RTRQDPASQRSSSRVRG




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser