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Report for CCDS29595.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29595.1 Public Mus musculus 19 Ms4a13 23 108 98 CCDS HistoryNCBI Gene:73466Re-query CCDS DB by CCDS ID:29595.1Re-query CCDS DB by GeneID:73466See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29595.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073380.12 ENSMUSP00000073095.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073380.12Link to Ensembl Protein Viewer:ENSMUSP00000073095.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000073380Re-query CCDS DB by Protein ID:ENSMUSP00000073095
Original member Current member NCBI NM_198224.3 NP_937867.2 Accepted alive Link to Nucleotide Sequence:NM_198224.3Link to Protein Sequence:NP_937867.2Re-query CCDS DB by Nucleotide ID:NM_198224Re-query CCDS DB by Protein ID:NP_937867Link to BLAST:NP_937867.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_937867.2 203 Q5FWC3-1 203 100% 0 0

Chromosomal Locations for CCDS 29595.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 11169937 11169996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11171879 11171965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11172531 11172626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11183805 11183924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11185103 11185159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11191468 11191608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11192928 11192978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (612 nt):
ATGGAATGTAGAAATCCAAAAGTATCTTCAGCAAATATTACTGTTTTAGGGGTTATCCAGATTATGATTG
GAATCTATCATGTACTCATGTGGTATTTCCTATTGCTGTTGTATATGGGACAAATTAAAGGAGTATTTGG
AACATATGAACCTGTAACTTACAAAATGGGAACTTCTTTATGGGGATTTGCTTTTGTCATTTCAGGGGCC
TTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATGATTCTCTGTACTATGTCCCTGAACATACTCT
GCATAATTATTACGATCGTTGCAGCCAGCCTAACAATAGTGGAATTGTCTCATTTCCGTTCGGTGTCATA
TAGAAATTATGGACAAGCAAAGCTGGGAAGGGAAGTGTCCCGTGTTTTGTTGTGCTCCTACCCCCTGGAA
TTCGCCATTGCCCTCTTGTACTCAATCTCTAGTTGTGCATATTTGCCCTTAAGTTCAATTGTGAAGTCAT
TGGTGAGGAAAACTTGGAGGCTCAGCAGCCTTGCTGCTTGGAGACAGATGATTTGGCTTGAGGCCGGAAA
CCAAGAGGAAACTTTAGAAAGTGTTACTGAAGTAGTGGAAGGCAACTCCTGA

Translation (203 aa):
MECRNPKVSSANITVLGVIQIMIGIYHVLMWYFLLLLYMGQIKGVFGTYEPVTYKMGTSLWGFAFVISGA
FTVKAAKYQSRHMILCTMSLNILCIIITIVAASLTIVELSHFRSVSYRNYGQAKLGREVSRVLLCSYPLE
FAIALLYSISSCAYLPLSSIVKSLVRKTWRLSSLAAWRQMIWLEAGNQEETLESVTEVVEGNS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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