NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29600.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29600.1 Public Mus musculus 19 Ms4a4b 23 108 98 CCDS HistoryNCBI Gene:60361Re-query CCDS DB by CCDS ID:29600.1Re-query CCDS DB by GeneID:60361See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29600.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035258.9 ENSMUSP00000046909.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035258.9Link to Ensembl Protein Viewer:ENSMUSP00000046909.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000035258Re-query CCDS DB by Protein ID:ENSMUSP00000046909
Original member Current member NCBI NM_021718.2 NP_068364.1 Accepted alive Link to Nucleotide Sequence:NM_021718.2Link to Protein Sequence:NP_068364.1Re-query CCDS DB by Nucleotide ID:NM_021718Re-query CCDS DB by Protein ID:NP_068364Link to BLAST:NP_068364.1

Chromosomal Locations for CCDS 29600.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 11449919 11450053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11454652 11454771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11457796 11457852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11459153 11459278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11461257 11461358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11462959 11463099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (681 nt):
ATGCAAGGACAGGAACAGACCACCATGGCAGTGGTTCCTGGAGTTGCTGTGCCTTCAAAGAATTCTGTTA
TGACATCACAAATGTGGAATGAGAAGAAAGAGAAATTCTTGAAGGGGGAACCCAAAGTCCTTGGGGTTTT
ACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTA
CCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATGTTCATTGTCTCCGGATCCCTGTCCA
TTGCAGCAGGAGTGACACCTACAAAATGCCTGATCGTTGCCAGTCTAACTCTGAACACTATCACCTCTGT
GTTGGCTGCAACTGCAAGCATAATGGGTGTAGTCAGTGTGGCTGTGGGTTCACAGTTTCCGTTTCGGTAT
AATTATACAATCACCAAGGGTTTGGATGTTTTGATGTTAATTTTCAATATGCTAGAATTCTGCCTTGCTG
TGTCCGTCTCTGCATTTGGATGTGAAGCTTCCTGTTGTAACTCCCGTGAGGTTCTTGTAGTGCTACCATC
AAATCCTGTTGAGACAGTGATGGCACCCCCAATGACACTTCAACCATTGCTACCATCAGAACACCAAGGG
ACCAATGTTCCAGGAAATGTGTACAAGAACCACCCAGGAGAAATAGTCTAA

Translation (226 aa):
MQGQEQTTMAVVPGVAVPSKNSVMTSQMWNEKKEKFLKGEPKVLGVLQVMIAIINLSLGIIILTTLFSEL
PTSVMLMVPIWGSIMFIVSGSLSIAAGVTPTKCLIVASLTLNTITSVLAATASIMGVVSVAVGSQFPFRY
NYTITKGLDVLMLIFNMLEFCLAVSVSAFGCEASCCNSREVLVVLPSNPVETVMAPPMTLQPLLPSEHQG
TNVPGNVYKNHPGEIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH