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Report for CCDS29600.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29600.1 Public Mus musculus 19 Ms4a4b 23 108 98 CCDS HistoryNCBI Gene:60361Re-query CCDS DB by CCDS ID:29600.1Re-query CCDS DB by GeneID:60361See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29600.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035258.9 ENSMUSP00000046909.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035258.9Link to Ensembl Protein Viewer:ENSMUSP00000046909.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000035258Re-query CCDS DB by Protein ID:ENSMUSP00000046909
Original member Current member NCBI NM_021718.2 NP_068364.1 Accepted alive Link to Nucleotide Sequence:NM_021718.2Link to Protein Sequence:NP_068364.1Re-query CCDS DB by Nucleotide ID:NM_021718Re-query CCDS DB by Protein ID:NP_068364Link to BLAST:NP_068364.1

Chromosomal Locations for CCDS 29600.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 11449919 11450053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11454652 11454771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11457796 11457852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11459153 11459278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11461257 11461358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11462959 11463099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (681 nt):
ATGCAAGGACAGGAACAGACCACCATGGCAGTGGTTCCTGGAGTTGCTGTGCCTTCAAAGAATTCTGTTA
TG
ACATCACAAATGTGGAATGAGAAGAAAGAGAAATTCTTGAAGGGGGAACCCAAAGTCCTTGGGGTTTT
A
CAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTA
CCC
ACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATGTTCATTGTCTCCGGATCCCTGTCCA
TT
GCAGCAGGAGTGACACCTACAAAATGCCTGATCGTTGCCAGTCTAACTCTGAACACTATCACCTCTGT
G
TTGGCTGCAACTGCAAGCATAATGGGTGTAGTCAGTGTGGCTGTGGGTTCACAGTTTCCGTTTCGGTAT
AAT
TATACAATCACCAAGGGTTTGGATGTTTTGATGTTAATTTTCAATATGCTAGAATTCTGCCTTGCTG
TG
TCCGTCTCTGCATTTGGATGTGAAGCTTCCTGTTGTAACTCCCGTGAGGTTCTTGTAGTGCTACCATC
A
AATCCTGTTGAGACAGTGATGGCACCCCCAATGACACTTCAACCATTGCTACCATCAGAACACCAAGGG
ACC
AATGTTCCAGGAAATGTGTACAAGAACCACCCAGGAGAAATAGTCTAA


Translation (226 aa):
MQGQEQTTMAVVPGVAVPSKNSVMTSQMWNEKKEKFLKGEPKVLGVLQVMIAIINLSLGIIILTTLFSEL
P
TSVMLMVPIWGSIM
FIVSGSLSIAAGVTPTKCLIVASLTLNTITSVLAATASIMGVVSVAVGSQFPFRY
N
YTITK
GLDVLMLIFNMLEFCLAVSVSAFGCEASCCNSREVLVVLPSNPVETVMAPPMTLQPLLPSEHQG
T
NVPGNVYKNHPGEIV




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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