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Report for CCDS29705.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29705.1 Public Mus musculus 19 Trpm3 23 108 98 CCDS HistoryNCBI Gene:226025Re-query CCDS DB by CCDS ID:29705.1Re-query CCDS DB by GeneID:226025See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29705.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037901.13 ENSMUSP00000042184.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037901.13Link to Ensembl Protein Viewer:ENSMUSP00000042184.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000037901Re-query CCDS DB by Protein ID:ENSMUSP00000042184
Original member Current member NCBI NM_177341.5 NP_796315.2 Accepted alive Link to Nucleotide Sequence:NM_177341.5Link to Protein Sequence:NP_796315.2Re-query CCDS DB by Nucleotide ID:NM_177341Re-query CCDS DB by Protein ID:NP_796315Link to BLAST:NP_796315.2

Chromosomal Locations for CCDS 29705.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 22448283 22448459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22697422 22697501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22698729 22698933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22711712 22711925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22715229 22715353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22733000 22733171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22766634 22766808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22793331 22793454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22856678 22856750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22883884 22883984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22885348 22885482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22889394 22889444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22897484 22897519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22897670 22897810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22900134 22900163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22901046 22901335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22901988 22902216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22904635 22904802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22910035 22910175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22914431 22914559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22918603 22918854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22925896 22926070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22978292 22978442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22978556 22978755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22982583 22982715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22986856 22987139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22988794 22988816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4014 nt):
ATGCCAGGGCCGTGGGGGACCGTTTATTTTCTAGGCACTGCCCAGATTTGCAGTTTCTTGTCTTCCCGGT
GGAATTTGGAAGGGGTCATGAATCAGACTGATGCTTCTCGACCCCTAAATTGGACCATCCGGAAGCTATG
CCACGCAGCCTTTCTCCCATCTGTCAGACTTCTCAAGGCTCAGAAATCCTGGATTGAAAGAGCATTTTAT
AAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATAGGTGTTGCTGTGGACGCCTCATAG
GCCAGCATGTTGGACTCACTCCCAGTATCTCTGTGCTTCAGAATGAGAAAAATGAGAGTCGCCTCTCCCG
AAATGACATCCAGTCTGAGAAGTGGTCTATCAGCAAACACACTCAGCTCAGCCCAACAGACGCTTTTGGG
ACCATTGAGTTCCAAGGAGGTGGCCATTCCAACAAAGCTATGTATGTCCGAGTATCTTTTGATACGAAAC
CTGATCTCTTGCTACACCTGATGACCAAGGAATGGCAACTGGAGCTTCCCAAACTTCTCATCTCCGTGCA
CGGAGGGCTGCAGAACTTTGAACTCCAGCCCAAACTCAAGCAAGTCTTCGGGAAGGGGCTCATCAAAGCA
GCCATGACAACTGGAGCCTGGATCTTCACTGGAGGGGTCAACACAGGTGTCATTCGTCATGTTGGAGATG
CCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGTACCATAGGTATCGCCCCCTGGGGAATTGT
GGAAAACCAGGAAGACCTGATTGGAAGAGATGTAGTCCGACCATACCAGACCATGTCCAATCCTATGAGC
AAGCTCACCGTTCTCAATAGCATGCACTCCCACTTCATCCTGGCTGACAATGGGACCACGGGGAAATACG
GAGCAGAGGTGAAACTCCGCAGACAACTGGAAAAGCACATTTCACTCCAGAAGATAAACACAAGAATCGG
TCAAGGGGTTCCAGTGGTGGCTCTCATCGTGGAAGGAGGACCCAATGTGATCTCAATTGTTTTGGAATAC
CTTCGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGGAGTGGACGGGCATCCGACATCCTGGCAT
TTGGGCATAAATATTCAGAAGAAGGCGGACTTATCAATGAATCTTTGAGGGACCAGCTGTTGGTGACAAT
ACAGAAGACCTTCACGTACACTCGAACCCAAGCTCAGCACCTGTTCATCATCCTCATGGAATGCATGAAG
AAGAAGGAACTGATCACAGTGTTTCGAATGGGGTCAGAAGGCCACCAGGACATTGATTTAGCTATCCTGA
CAGCATTACTCAAAGGTGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGT
TGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCGGTAGGGTCCCTGGAGCAAGCCATG
CTGGATGCCCTAGTCCTGGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACC
GTTTTCTCACCATCTCCAGACTAGAGGAACTGTACAATACGAGACATGGGCCCTCAAATACATTGTACCA
CTTGGTCAGGGATGTCAAAAAGCGAGAGTATCCAGGTTTCGGTTGGATCTATTTTAAGGGAAACCTGCCC
CCGGACTACAGAATCAGCCTGATAGACATTGGCCTGGTGATCGAGTACCTGATGGGCGGGGCTTACCGCT
GCAACTACACGCGCAAGCGCTTTCGGACCCTCTACCACAATCTCTTTGGCCCCAAAAGGCCCAAAGCCTT
GAAACTGCTGGGAATGGAGGATGATATTCCCTTGAGGAGAGGACGGAAGACAACTAAGAAGCGTGAGGAA
GAGGTGGACATCGACTTGGATGATCCTGAGATCAACCACTTTCCATTCCCCTTCCATGAGCTGATGGTGT
GGGCCGTCCTCATGAAGAGACAAAAGATGGCCCTGTTCTTCTGGCAACACGGAGAGGAGGCCATGGCCAA
AGCCCTGGTGGCCTGCAAGCTCTGCAAGGCCATGGCTCACGAGGCTTCTGAGAATGACATGGTCGATGAC
ATTTCCCAGGAGCTGAACCACAACTCCAGGGACTTTGGCCAGCTGGCTGTGGAGCTCCTGGACCAGTCCT
ACAAACAGGATGAGCAGCTGGCCATGAAGCTGCTGACGTATGAGCTGAAGAACTGGAGTAATGCCACATG
CCTGCAGCTGGCTGTGGCTGCCAAGCACCGTGACTTCATTGCACACACGTGCAGCCAGATGTTACTTACT
GACATGTGGATGGGACGGCTCCGGATGAGAAAGAACTCAGGCCTCAAGGTAATTCTGGGAATTCTACTTC
CTCCTTCAATTCTCAGCTTGGAGTTCAAGAACAAAGATGACATGCCCTATATGACTCAGGCCCAGGAGAT
TCATCTCCAAGAGAAGGAGCCGGAGGAGCCAGAGAAGCCCACAAAGGAAAAAGATGAAGAGGACATGGAG
CTAACAGCAATGTTGGGGCGAAGCAATGGGGAATCATCCAGAAAGAAAGATGAAGAAGAAGTTCAAAGCA
GGCACCGGCTAATCCCCGTGGGCCGAAAAATCTATGAGTTCTACAACGCACCCATCGTGAAGTTCTGGTT
CTACACTCTGGCGTATATTGGATACCTGATGCTCTTCAACTACATCGTGTTAGTGAAGATGGAGCGCTGG
CCTTCCACTCAGGAATGGATTGTCATCTCCTACATTTTCACTCTGGGAATAGAGAAGATGAGAGAGATCC
TGATGTCGGAGCCGGGCAAGCTGCTGCAGAAGGTGAAGGTGTGGCTTCAGGAGTACTGGAACGTCACAGA
CCTCATCGCCATCCTTCTCTTCTCGGTGGGAATGATCCTTCGTCTTCAAGATCAGCCCTTCAGGAGTGAC
GGGAGGGTCATCTACTGTGTGAACATCATTTATTGGTATATCCGTTTGCTGGACATCTTCGGCGTGAACA
AGTATCTGGGCCCATATGTGATGATGATTGGGAAAATGATGATAGACATGATGTACTTTGTCATCATTAT
GCTGGTGGTGCTGATGAGCTTTGGGGTCGCCAGGCAAGCCATTCTCTTTCCCAATGAGGAGCCATCTTGG
AAACTGGCCAAGAATATCTTCTACATGCCTTATTGGATGATTTATGGGGAAGTGTTTGCTGACCAGATAG
ACCCTCCCTGTGGACAGAATGAGACCCGAGAGGATGGCAAGACAATCCAGCTGCCCCCATGCAAGACAGG
AGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCGAACATCCTTCTGGTCAACCTCCTT
ATTGCCGTCTTCAACAATACATTTTTTGAGGTCAAGTCGATATCCAACCAAGTATGGAAATTTCAGAGGT
ACCAGCTCATCATGACTTTCCACGAGAGGCCGGTTCTGCCCCCACCGCTCATCATCTTCAGTCACATGAC
CATGATCTTCCAGCATGTGTGCTGCCGGTGGAGGAAGCATGAGAGTGACCAGGACGAAAGGGACTACGGC
CTGAAACTCTTCATAACTGACGATGAGCTCAAGAAAGTACACGATTTTGAAGAGCAGTGCATAGAGGAAT
ATTTCCGAGAGAAGGATGATCGCTTCAATTCGTCCAACGATGAGAGGATACGTGTTACATCAGAAAGGGT
GGAGAACATGTCCATGAGGCTGGAGGAAGTTAATGAGAGAGAACATTCCATGAAGGCTTCACTCCAGACC
GTGGACATCCGGCTAGCACAGCTAGAGGACCTCATCGGGCGCATGGCCACCGCCCTGGAGCGCCTGACTG
GTCTGGAGCGGGCAGAGTCTAACAAAATCCGCTCAAGGACCTCCTCAGACTGCACAGATGCAGCCTACAT
CGTCCGCCAGAGCAGCTTCAACAGCCAGGAAGGGAACACCTTCAAACTTCAAGAGAGTATAGACCCTGCA
GAACATCCTTTTTATTCAGTATAA

Translation (1337 aa):
MPGPWGTVYFLGTAQICSFLSSRWNLEGVMNQTDASRPLNWTIRKLCHAAFLPSVRLLKAQKSWIERAFY
KRECVHIIPSTKDPHRCCCGRLIGQHVGLTPSISVLQNEKNESRLSRNDIQSEKWSISKHTQLSPTDAFG
TIEFQGGGHSNKAMYVRVSFDTKPDLLLHLMTKEWQLELPKLLISVHGGLQNFELQPKLKQVFGKGLIKA
AMTTGAWIFTGGVNTGVIRHVGDALKDHASKSRGKICTIGIAPWGIVENQEDLIGRDVVRPYQTMSNPMS
KLTVLNSMHSHFILADNGTTGKYGAEVKLRRQLEKHISLQKINTRIGQGVPVVALIVEGGPNVISIVLEY
LRDTPPVPVVVCDGSGRASDILAFGHKYSEEGGLINESLRDQLLVTIQKTFTYTRTQAQHLFIILMECMK
KKELITVFRMGSEGHQDIDLAILTALLKGANASAPDQLSLALAWNRVDIARSQIFIYGQQWPVGSLEQAM
LDALVLDRVDFVKLLIENGVSMHRFLTISRLEELYNTRHGPSNTLYHLVRDVKKREYPGFGWIYFKGNLP
PDYRISLIDIGLVIEYLMGGAYRCNYTRKRFRTLYHNLFGPKRPKALKLLGMEDDIPLRRGRKTTKKREE
EVDIDLDDPEINHFPFPFHELMVWAVLMKRQKMALFFWQHGEEAMAKALVACKLCKAMAHEASENDMVDD
ISQELNHNSRDFGQLAVELLDQSYKQDEQLAMKLLTYELKNWSNATCLQLAVAAKHRDFIAHTCSQMLLT
DMWMGRLRMRKNSGLKVILGILLPPSILSLEFKNKDDMPYMTQAQEIHLQEKEPEEPEKPTKEKDEEDME
LTAMLGRSNGESSRKKDEEEVQSRHRLIPVGRKIYEFYNAPIVKFWFYTLAYIGYLMLFNYIVLVKMERW
PSTQEWIVISYIFTLGIEKMREILMSEPGKLLQKVKVWLQEYWNVTDLIAILLFSVGMILRLQDQPFRSD
GRVIYCVNIIYWYIRLLDIFGVNKYLGPYVMMIGKMMIDMMYFVIIMLVVLMSFGVARQAILFPNEEPSW
KLAKNIFYMPYWMIYGEVFADQIDPPCGQNETREDGKTIQLPPCKTGAWIVPAIMACYLLVANILLVNLL
IAVFNNTFFEVKSISNQVWKFQRYQLIMTFHERPVLPPPLIIFSHMTMIFQHVCCRWRKHESDQDERDYG
LKLFITDDELKKVHDFEEQCIEEYFREKDDRFNSSNDERIRVTSERVENMSMRLEEVNEREHSMKASLQT
VDIRLAQLEDLIGRMATALERLTGLERAESNKIRSRTSSDCTDAAYIVRQSSFNSQEGNTFKLQESIDPA
EHPFYSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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