NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29847.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29847.1 Public Mus musculus 19 Scd3 23 108 98 CCDS HistoryNCBI Gene:30049Re-query CCDS DB by CCDS ID:29847.1Re-query CCDS DB by GeneID:30049See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29847.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026220.6 ENSMUSP00000026220.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026220.6Link to Ensembl Protein Viewer:ENSMUSP00000026220.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000026220Re-query CCDS DB by Protein ID:ENSMUSP00000026220
Original member Current member NCBI NM_024450.2 NP_077770.1 Accepted alive Link to Nucleotide Sequence:NM_024450.2Link to Protein Sequence:NP_077770.1Re-query CCDS DB by Nucleotide ID:NM_024450Re-query CCDS DB by Protein ID:NP_077770Link to BLAST:NP_077770.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077770.1 359 Q99PL7-1 359 100% 0 0

Chromosomal Locations for CCDS 29847.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 44203521 44203547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44215402 44215684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44234223 44234353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44235771 44235976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44238376 44238608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44241660 44241859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGCCAGGGCACCTGCTGCAAGAAGAGATGACGCCTTCGTACACGACCACCACCACCATCACAGCGCCTC
CCTCTGGAAGCCTGCAGAATGGACGAGAGAAGGTGAAGACGGTGCCCCTCTACCTGGAAGAAGACATCCG
TCCTGAAATGAAAGAAGATATATACGACCCCACCTATCAGGATGAGGAGGGGCCCCCGCCCAAGCTGGAG
TACGTCTGGAGGAACATCATTCTCATGGCCCTGCTGCACGTGGGAGCCCTGTACGGGATCACACTGGTTC
CCTCCTGCAAGCTCTACACCTGCCTCTTCGCGTTTGTCTACTATGTGATCAGTATTGAGGGCATTGGAGC
CGGAGTCCATCGCCTGTGGAGCCACAGAACGTACAAGGCACGCCTGCCCCTGCGGATCTTCCTCATCATT
GCCAACACCATGGCGTTCCAGAATGACGTGTATGAATGGGCCCGAGATCACCGAGCCCACCACAAGTTCT
CAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGT
GCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTG
GTGATGTTCCAGAGGAGGTACTACAAGCCTGGCATTCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGC
CCTGGTACTGCTGGGGCGAGACTTTTCTAAACAGTTTTTATGTTGCCACTTTACTGAGATACGCTGTGGT
GCTCAACGCCACTTGGCTGGTGAACAGTGCCGCCCACCTCTACGGGTATCGCCCCTACGATAAGAACATC
GATCCCCGGCAGAATGCCCTGGTTTCCTTGGGAAGTATGGGCGAGGGCTTCCACAACTACCACCATGCCT
TCCCCTACGACTACTCTGCCAGTGAGTACCGCTGGCACATCAACTTCACCACGTTCTTCATCGACTGCAT
GGCTGCACTGGGCCTGGCTTACGACCGGAAGAGAGTGTCCAAGGCCACTGTCTTAGCCAGGATTAAGAGA
ACTGGAGACGGGAGTCACAAGAGTGGCTGA

Translation (359 aa):
MPGHLLQEEMTPSYTTTTTITAPPSGSLQNGREKVKTVPLYLEEDIRPEMKEDIYDPTYQDEEGPPPKLE
YVWRNIILMALLHVGALYGITLVPSCKLYTCLFAFVYYVISIEGIGAGVHRLWSHRTYKARLPLRIFLII
ANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWLLVRKHPAVKEKGGKLDMSDLKAEKL
VMFQRRYYKPGILLMCFILPTLVPWYCWGETFLNSFYVATLLRYAVVLNATWLVNSAAHLYGYRPYDKNI
DPRQNALVSLGSMGEGFHNYHHAFPYDYSASEYRWHINFTTFFIDCMAALGLAYDRKRVSKATVLARIKR
TGDGSHKSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH