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Report for CCDS30016.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30016.1 Public Mus musculus X Tspan7 23 108 98 CCDS HistoryNCBI Gene:21912Re-query CCDS DB by CCDS ID:30016.1Re-query CCDS DB by GeneID:21912See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30016.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076354.12 ENSMUSP00000075692.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076354.12Link to Ensembl Protein Viewer:ENSMUSP00000075692.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000076354Re-query CCDS DB by Protein ID:ENSMUSP00000075692
Original member Current member NCBI NM_019634.2 NP_062608.2 Accepted alive Link to Nucleotide Sequence:NM_019634.2Link to Protein Sequence:NP_062608.2Re-query CCDS DB by Nucleotide ID:NM_019634Re-query CCDS DB by Protein ID:NP_062608Link to BLAST:NP_062608.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062608.2 249 Q62283 249 100% 0 0

Chromosomal Locations for CCDS 30016.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 10485158 10485238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10579315 10579503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10582165 10582239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10584042 10584137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10585497 10585652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10590136 10590219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 10595279 10595347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (750 nt):
ATGGCATCGAGGAGAATGGAGACCAAACCTGTGATAACCTGTCTCAAAACCCTCCTCATCATCTACTCCT
TCGTCTTCTGGATCACTGGGGTGATCCTGTTGGCCGTTGGAGTCTGGGGAAAGCTGACTTTGGGAACCTA
TATCTCCCTGATTGCTGAGAACTCCACAAATGCTCCCTATGTGCTCATTGGAACCGGCACCACCATCGTG
GTTTTTGGCCTCTTTGGATGCTTTGCTACATGCCGTGGTAGTCCATGGATGCTGAAACTGTATGCCATGT
TCCTGTCCCTGGTGTTCCTGGCTGAGCTTGTTGCTGGCATTTCTGGATTTGTGTTTCGTCATGAGATCAA
GGACACCTTCCTGAGGACTTACACGGATGCCATGCAGAACTACAATGGCAATGATGAGAGGAGCCGGGCT
GTGGACCATGTGCAGCGCAGCCTGAGCTGCTGTGGCGTGCAGAACTACACCAACTGGAGCAGCAGCCCCT
ACTTCCTGGACCATGGCATCCCCCCCAGTTGCTGCATGAACGAAACTGACTGCAATCCCCTGGATCTGCA
CAATCTGACTGTGGCCGCCACCAAAGTTAATCAGAAGGGCTGTTATGATCTGGTGACCAGTTTTATGGAG
ACTAACATGGGGATCATTGCTGGAGTGGCATTTGGAATTGCGTTCTCCCAGTTGATTGGCATGCTGCTGG
CTTGCTGTCTGTCCCGGTTCATCACTGCCAATCAGTATGAGATGGTGTAA

Translation (249 aa):
MASRRMETKPVITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPYVLIGTGTTIV
VFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQNYNGNDERSRA
VDHVQRSLSCCGVQNYTNWSSSPYFLDHGIPPSCCMNETDCNPLDLHNLTVAATKVNQKGCYDLVTSFME
TNMGIIAGVAFGIAFSQLIGMLLACCLSRFITANQYEMV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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