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Report for CCDS30327.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30327.1 Public Mus musculus X Dmrtc1a 23 108 98 CCDS HistoryNCBI Gene:70887Re-query CCDS DB by CCDS ID:30327.1Re-query CCDS DB by GeneID:70887See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30327.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033686.1 ENSMUSP00000033686.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033686.1Link to Ensembl Protein Viewer:ENSMUSP00000033686.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000033686Re-query CCDS DB by Protein ID:ENSMUSP00000033686
Original member Current member NCBI NM_027591.3 NP_081867.1 Accepted alive Link to Nucleotide Sequence:NM_027591.3Link to Protein Sequence:NP_081867.1Re-query CCDS DB by Nucleotide ID:NM_027591Re-query CCDS DB by Protein ID:NP_081867Link to BLAST:NP_081867.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081867.1 201 Q9D9R7-3 201 100% 0 0

Chromosomal Locations for CCDS 30327.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 102903812 102903846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102904750 102904879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102905055 102905121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102905924 102906060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102906368 102906423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102906712 102906869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102908614 102908636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (606 nt):
ATGCAGCGGTCTTCGGGTTCCCGGGAACCTCGTAAGGACTTTTCTCCTGTGACCACCTCCAAGAAGGAGG
AGGCTACCCCATTAAAGAGACGCCTGGTTGAGAGACATAAAAGGACTATGGCTGCTGCTCATCCATCACA
CATGCACGTCAAGAAATTGGCTGTAGAAGAAGGAGTTCGCACTGGAAAGAACACTGTGCAGCAGATCCAG
GCCCAGGTTGACACAGCAACCCAGGAGGAGAGCTCCCAAGGGCCTGTGCTGCTGAACCAGCACCCAGAAA
CAACATCTGTGCCATATACTCCAGAGACTGTGGGGCAACAACTGATGGTGTCCCTTCCTGGGGAGCCCCA
TGGGACCTCTGCCATGCCAAGCATGTGTCCAAGCCTGATTCTTCAGCCCTGTGCCACCACTGACCCTATG
CTACTGCAACCACAGGTCATGGGCCCCAGTGCCTCCAACCAGGCTTCAGTTTCTGCTACCTTAGAGTGGC
AGGAGATGCTGGAGGCTGCTGAAGCTCTGCTGGCTCTGAAAAATTCGTCTCAGACACGTCACCAGCCCTG
TGGCATGCCAGTGAAGAGAGAGCTAAGCGGAGCATCACGTATGTGA

Translation (201 aa):
MQRSSGSREPRKDFSPVTTSKKEEATPLKRRLVERHKRTMAAAHPSHMHVKKLAVEEGVRTGKNTVQQIQ
AQVDTATQEESSQGPVLLNQHPETTSVPYTPETVGQQLMVSLPGEPHGTSAMPSMCPSLILQPCATTDPM
LLQPQVMGPSASNQASVSATLEWQEMLEAAEALLALKNSSQTRHQPCGMPVKRELSGASRM


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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