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Report for CCDS30387.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30387.1 Public Mus musculus X Tspan6 23 108 98 CCDS HistoryNCBI Gene:56496Re-query CCDS DB by CCDS ID:30387.1Re-query CCDS DB by GeneID:56496See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30387.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087557.11 ENSMUSP00000084838.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087557.11Link to Ensembl Protein Viewer:ENSMUSP00000084838.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000087557Re-query CCDS DB by Protein ID:ENSMUSP00000084838
Original member Current member NCBI NM_019656.3 NP_062630.2 Accepted alive Link to Nucleotide Sequence:NM_019656.3Link to Protein Sequence:NP_062630.2Re-query CCDS DB by Nucleotide ID:NM_019656Re-query CCDS DB by Protein ID:NP_062630Link to BLAST:NP_062630.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062630.2 245 O70401 245 99.5918% 0 1

Chromosomal Locations for CCDS 30387.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 133892698 133892766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133894499 133894582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133894928 133895062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133895435 133895533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133896683 133896757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133897124 133897312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133898208 133898294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (738 nt):
ATGGCGTCCCCATCTCGGAGGCTGCAGACTAAGCCGGTCATTACTTGTTTGAAAAGCGTTCTCTTGATCT
AC
ACTTTCATCTTTTGGATCACTGGTGTTATCCTTCTTGCCGTTGGCATTTGGGGCAAGGTGAGCCTGGA
A
AATTATTTTTCCCTCTTAAATGAGAAGGCCACCAATGTGCCTTTTGTGCTCATTGGCACAGGCACTGTC
ATT
ATTCTCTTGGGCACCTTTGGTTGTTTCGCTACCTGTCGAGCCTCCGCCTGGATGCTGAAACTGTACG
CG
ATGTTTCTGACACTCATTTTTTTGGTCGAACTAGTTGCCGCCATTGTTGGATTTGTTTTCAGACATGA
G
ATTAAGAACAGCTTTAAAAGTAACTATGAAAACGCTCTGAAGGAGTACAACTCCACAGGAGACTATAGA
AGT
GAAGCTGTAGACAAGATCCAAAGTACGTTGCATTGTTGCGGTGTCACCAATTACGGAGATTGGAAAG
GT
ACGAACTATTACTCAGAAACAGGATTTCCCAAGAGCTGCTGTAAACTGGAGGGCTGTTATCCACAGAG
A
GATGCAGATAAAGTCAACGAAGAGGGTTGTTTCATAAAGGTAATGACAACTATAGAGTCAGAAATGGGA
GTC
GTTGCTGGAATTTCTTTTGGAGTTGCTTGCTTTCAGCTAATTGGAATCTTTCTTGCCTACTGCCTGT
CT
CGTGCCATAACGAATAACCAGTATGAGATAGTATAA


Translation (245 aa):
MASPSRRLQTKPVITCLKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNVPFVLIGTGTV
I
ILLGTFGCFATCRASAWMLKL
YAMFLTLIFLVELVAAIVGFVFRHEIKNSFKSNYENALKEYNSTGDYR
S
EAVDKIQST
LHCCGVTNYGDWKGTNYYSETGFPKSCCKLEGCYPQRDADKVNEEGCFIKVMTTIESEMG
V
VAGISFGVACFQ
LIGIFLAYCLSRAITNNQYEIV



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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