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Report for CCDS30813.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30813.1 Public Homo sapiens 1 IGSF3 24 110 108 CCDS HistoryNCBI Gene:3321Re-query CCDS DB by CCDS ID:30813.1Re-query CCDS DB by GeneID:3321See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30813.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369486.8 ENSP00000358498.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369486.8Link to Ensembl Protein Viewer:ENSP00000358498.4Re-query CCDS DB by Nucleotide ID:ENST00000369486Re-query CCDS DB by Protein ID:ENSP00000358498
Original member Current member NCBI NM_001007237.3 NP_001007238.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001007237.3Link to Protein Sequence:NP_001007238.1Re-query CCDS DB by Nucleotide ID:NM_001007237Re-query CCDS DB by Protein ID:NP_001007238Link to BLAST:NP_001007238.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007238.1 1194 O75054-1 1194 100% 0 0

Chromosomal Locations for CCDS 30813.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 116577312 116577562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 116579392 116579877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 116584645 116585052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 116588694 116589104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 116599941 116600345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 116603624 116604025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 116607942 116608331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 116613765 116614175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 116616080 116616457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 116666284 116666326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3585 nt):
ATGAAGTGCTTTTTCCCGGTGCTGAGCTGTCTGGCTGTGCTGGGTGTGGTGTCAGCACAGCGGCAGGTCA
CCGTTCAGGAAGGACCCTTGTACCGCACGGAGGGCTCCCACATCACTATCTGGTGCAATGTGAGTGGCTA
CCAGGGACCTTCTGAGCAGAATTTCCAGTGGTCCATTTACCTGCCTTCGTCGCCAGAGCGAGAGGTGCAG
ATCGTCAGCACCATGGACTCTTCCTTCCCCTATGCCATCTACACCCAGCGCGTCCGCGGAGGGAAGATCT
TCATAGAAAGAGTCCAGGGGAACTCAACCCTATTGCACATCACAGATCTTCAGGCCCGGGATGCCGGGGA
GTATGAATGCCACACACCCAGCACTGATAAGCAATACTTTGGGAGTTACAGTGCAAAGATGAACCTAGTG
GTGATCCCAGACTCCCTGCAGACCACTGCCATGCCCCAGACTCTGCACAGAGTGGAGCAGGACCCGCTGG
AGCTCACTTGTGAGGTGGCCTCAGAGACCATTCAGCACAGCCACCTGTCTGTGGCCTGGCTCCGGCAGAA
AGTTGGCGAGAAGCCCGTGGAGGTCATCTCCCTGAGCCGAGATTTCATGCTTCACTCCAGCAGCGAATAT
GCCCAGAGGCAGAGCCTGGGGGAGGTGCGGCTGGACAAGCTGGGGAGGACCACCTTCCGCCTCACCATCT
TCCACCTGCAGCCTTCTGACCAGGGCGAATTCTACTGCGAGGCCGCCGAGTGGATCCAGGATCCGGATGG
GTCGTGGTATGCTATGACCCGAAAGCGTTCCGAGGGAGCCGTGGTCAACGTCCAGCCAACTGACAAAGAA
TTCACTGTTCGGCTGGAGACAGAGAAGCGGCTGCACACGGTGGGCGAGCCGGTGGAGTTCAGATGCATCC
TGGAGGCTCAGAATGTTCCCGACCGTTACTTTGCTGTCTCCTGGGCCTTCAACAGCTCGCTCATCGCCAC
CATGGGTCCTAACGCTGTGCCTGTCCTCAACAGCGAATTTGCTCACCGGGAAGCCAGGGGACAGCTTAAG
GTGGCCAAAGAGAGCGACAGTGTCTTTGTGCTGAAGATCTACCACCTCCGCCAGGAAGATAGCGGGAAAT
ACAACTGCCGGGTGACTGAGCGAGAGAAAACCGTGACCGGGGAATTCATTGATAAGGAGAGCAAGCGTCC
CAAGAACATCCCCATCATAGTCCTCCCCCTCAAGAGCAGCATCTCCGTGGAGGTGGCCAGCAATGCCAGC
GTCATCCTTGAGGGCGAGGACCTGCGCTTCTCCTGCAGTGTCCGCACGGCAGGCAGGCCGCAGGGTCGCT
TCTCTGTCATCTGGCAGCTTGTGGACAGGCAGAACCGCCGCAGCAATATCATGTGGCTAGACCGGGATGG
CACCGTGCAGCCAGGCTCGTCCTACTGGGAGCGCAGCAGCTTTGGGGGCGTCCAGATGGAGCAGGTGCAG
CCCAACTCGTTCAGCCTGGGCATCTTCAACAGCAGGAAGGAGGACGAGGGCCAGTATGAATGCCATGTGA
CTGAATGGGTGCGGGCAGTGGATGGCGAGTGGCAGATTGTTGGGGAGCGCCGGGCCAGCACTCCCATCTC
CATCACAGCTCTTGAAATGGGCTTCGCAGTCACAGCCATCTCCCGGACACCGGGGGTGACCTACAGCGAC
TCCTTTGACTTGCAGTGTATCATCAAACCCCACTACCCTGCCTGGGTCCCCGTGTCGGTGACATGGCGGT
TCCAGCCGGTGGGCACGGTGGAGTTCCATGACTTGGTGACCTTCACCCGGGACGGAGGGGTCCAGTGGGG
GGACAGGTCCTCCAGCTTCCGAACCCGAACTGCCATCGAGAAGGCTGAGTCCAGCAACAACGTCCGCCTA
AGCATCAGCCGAGCCAGTGACACGGAAGCAGGCAAGTACCAGTGTGTGGCAGAGCTGTGGCGGAAGAACT
ACAACAACACCTGGACGCGACTGGCGGAGAGGACCTCCAACCTGCTGGAGATCAGGGTGCTGCAGCCAGT
GACAAAGCTGCAGGTGAGCAAATCGAAGAGGACCCTCACCCTGGTGGAAAACAAGCCCATTCAGTTGAAC
TGCTCAGTCAAGTCTCAGACTAGCCAGAACTCCCACTTTGCGGTGCTCTGGTATGTCCACAAGCCCTCGG
ATGCCGATGGCAAGCTTATCCTGAAGACCACCCACAACTCCGCCTTTGAATACGGTACTTACGCCGAGGA
GGAGGGCCTGAGAGCCAGGCTCCAGTTTGAGAGGCATGTGTCGGGGGGCCTGTTCAGCCTCACCGTCCAG
AGAGCCGAGGTCAGCGACAGCGGCAGCTACTACTGCCACGTGGAGGAGTGGCTGCTGAGCCCCAACTACG
CCTGGTACAAGCTGGCAGAGGAGGTTTCTGGGCGCACAGAAGTCACTGTGAAACAGCCAGACAGCCGCCT
GAGGCTCAGCCAAGCCCAGGGGAACCTGTCGGTTCTGGAGACCCGGCAGGTACAGCTGGAGTGTGTGGTT
CTCAACCGCACCAGCATAACCTCCCAGCTCATGGTGGAATGGTTTGTATGGAAGCCCAACCACCCTGAGC
GGGAGACTGTGGCCCGCTTGAGCCGTGACGCCACCTTCCACTATGGAGAGCAGGCAGCCAAGAACAATCT
GAAGGGGCGGCTGCATTTGGAGAGTCCTTCCCCCGGCGTGTACCGTCTCTTCATCCAGAACGTGGCTGTG
CAGGACAGCGGGACCTACAGCTGCCATGTGGAGGAGTGGCTGCCCAGCCCCAGTGGCATGTGGTATAAGC
GGGCAGAGGACACCGCTGGGCAGACAGCTCTGACAGTCATGCGACCAGATGCTTCCCTGCAGGTGGACAC
AGTGGTCCCCAATGCCACGGTCTCTGAGAAGGCAGCTTTCCAGCTGGACTGTAGCATCGTGTCCCGCTCC
AGCCAGGACTCCCGCTTCGCTGTGGCCTGGTATTCCCTGAGGACTAAAGCTGGGGGGAAAAGGAGCAGCC
CTGGCCTGGAAGAACAGGAAGAGGAAAGGGAGGAGGAGGAGGAGGAGGACGACGACGACGACGACGACCC
AACAGAGCGGACGGCCCTGCTGAGCGTGGGCCCAGATGCTGTCTTTGGCCCAGAGGGCAGTCCTTGGGAG
GGCAGGCTTCGCTTCCAGAGGCTCTCCCCGGTGCTCTACCGGCTCACAGTGCTGCAGGCAAGCCCCCAAG
ATACAGGCAATTACTCCTGCCATGTGGAGGAGTGGCTGCCCAGCCCTCAGAAGGAATGGTACCGGCTGAC
GGAGGAGGAGTCAGCCCCCATCGGCATCCGTGTTCTAGATACAAGTCCCACCCTCCAGTCCATCATCTGC
TCCAACGACGCACTCTTCTACTTCGTCTTCTTCTACCCTTTCCCCATCTTTGGCATTCTTATCATCACCA
TCCTTCTGGTGCGTTTCAAGAGCCGGAACTCCAGCAAGAACTCTGATGGGAAGAATGGGGTGCCTCTGCT
GTGGATCAAAGAGCCACACCTCAACTACTCCCCTACTTGCCTGGAGCCCCCTGTTCTCAGTATCCATCCA
GGGGCCATAGACTAA

Translation (1194 aa):
MKCFFPVLSCLAVLGVVSAQRQVTVQEGPLYRTEGSHITIWCNVSGYQGPSEQNFQWSIYLPSSPEREVQ
IVSTMDSSFPYAIYTQRVRGGKIFIERVQGNSTLLHITDLQARDAGEYECHTPSTDKQYFGSYSAKMNLV
VIPDSLQTTAMPQTLHRVEQDPLELTCEVASETIQHSHLSVAWLRQKVGEKPVEVISLSRDFMLHSSSEY
AQRQSLGEVRLDKLGRTTFRLTIFHLQPSDQGEFYCEAAEWIQDPDGSWYAMTRKRSEGAVVNVQPTDKE
FTVRLETEKRLHTVGEPVEFRCILEAQNVPDRYFAVSWAFNSSLIATMGPNAVPVLNSEFAHREARGQLK
VAKESDSVFVLKIYHLRQEDSGKYNCRVTEREKTVTGEFIDKESKRPKNIPIIVLPLKSSISVEVASNAS
VILEGEDLRFSCSVRTAGRPQGRFSVIWQLVDRQNRRSNIMWLDRDGTVQPGSSYWERSSFGGVQMEQVQ
PNSFSLGIFNSRKEDEGQYECHVTEWVRAVDGEWQIVGERRASTPISITALEMGFAVTAISRTPGVTYSD
SFDLQCIIKPHYPAWVPVSVTWRFQPVGTVEFHDLVTFTRDGGVQWGDRSSSFRTRTAIEKAESSNNVRL
SISRASDTEAGKYQCVAELWRKNYNNTWTRLAERTSNLLEIRVLQPVTKLQVSKSKRTLTLVENKPIQLN
CSVKSQTSQNSHFAVLWYVHKPSDADGKLILKTTHNSAFEYGTYAEEEGLRARLQFERHVSGGLFSLTVQ
RAEVSDSGSYYCHVEEWLLSPNYAWYKLAEEVSGRTEVTVKQPDSRLRLSQAQGNLSVLETRQVQLECVV
LNRTSITSQLMVEWFVWKPNHPERETVARLSRDATFHYGEQAAKNNLKGRLHLESPSPGVYRLFIQNVAV
QDSGTYSCHVEEWLPSPSGMWYKRAEDTAGQTALTVMRPDASLQVDTVVPNATVSEKAAFQLDCSIVSRS
SQDSRFAVAWYSLRTKAGGKRSSPGLEEQEEEREEEEEEDDDDDDDPTERTALLSVGPDAVFGPEGSPWE
GRLRFQRLSPVLYRLTVLQASPQDTGNYSCHVEEWLPSPQKEWYRLTEEESAPIGIRVLDTSPTLQSIIC
SNDALFYFVFFYPFPIFGILIITILLVRFKSRNSSKNSDGKNGVPLLWIKEPHLNYSPTCLEPPVLSIHP
GAID


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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