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Report for CCDS31275.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31275.1 Public Homo sapiens 10 PCGF6 24 110 108 CCDS HistoryNCBI Gene:84108Re-query CCDS DB by CCDS ID:31275.1Re-query CCDS DB by GeneID:84108See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31275.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369847.4 ENSP00000358862.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369847.4Link to Ensembl Protein Viewer:ENSP00000358862.3Re-query CCDS DB by Nucleotide ID:ENST00000369847Re-query CCDS DB by Protein ID:ENSP00000358862
Original member Current member NCBI NM_001011663.2 NP_001011663.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001011663.2Link to Protein Sequence:NP_001011663.1Re-query CCDS DB by Nucleotide ID:NM_001011663Re-query CCDS DB by Protein ID:NP_001011663Link to BLAST:NP_001011663.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001011663.1 350 Q9BYE7-1 350 100% 0 0

Chromosomal Locations for CCDS 31275.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 103303905 103303961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103314186 103314272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103326534 103326632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103333925 103333952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103345024 103345132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103347238 103347297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103347395 103347450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103348716 103348812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103348900 103348999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103350707 103351066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGGAGGGGGTCGCGGTGGTGACGGCGGGCAGCGTAGGCGCTGCCAAAACCGAGGGAGCTGCAGCCTTGC
CGCCTCCGCCTCCTGTCTCCCCGCCCGCCCTCACCCCTGCACCCGCAGCGGGTGAGGAGGGACCGGCGCC
TCTGTCTGAGACGGGGGCTCCCGGCTGCTCCGGCTCCCGGCCCCCTGAGCTGGAGCCGGAGCGCAGCCTG
GGCCGCTTCAGAGGCCGCTTCGAGGACGAGGACGAGGAGTTGGAAGAAGAAGAGGAGCTGGAGGAGGAAG
AAGAGGAGGAGGAGGAGGACATGAGTCACTTCTCGTTGAGGCTGGAGGGAGGCCGGCAGGACTCGGAGGA
CGAGGAGGAGCGCCTGATTAATCTCTCTGAGCTGACCCCATACATCTTGTGTTCCATTTGCAAAGGTTAC
TTAATAGATGCAACTACCATCACAGAATGTCTTCATACCTTTTGTAAAAGCTGCATCGTAAGACATTTTT
ACTACAGCAACAGATGTCCAAAATGCAATATAGTAGTACATCAGACACAACCTCTTTATAACATAAGGTT
GGACCGACAGTTACAAGACATAGTGTACAAATTAGTGATCAATCTAGAGGAAAGAGAAAAAAAGCAAATG
CATGATTTCTATAAAGAAAGAGGTCTAGAAGTACCTAAACCTGCTGTTCCACAGCCAGTCCCTTCAAGCA
AAGGAAGATCTAAAAAAGTCCTAGAATCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTATTACT
GGAGTTCATTGGTGCTAATGAAGGCACGGGACATTTTAAGCCATTGGAAAAGAAGTTTGTTCGAGTTTCA
GGAGAAGCAACTATTGGACATGTAGAAAAATTCCTCAGAAGAAAAATGGGTCTTGATCCAGCTTGTCAGG
TAGATATAATCTGTGGTGATCACCTGTTGGAGCAGTATCAAACTCTAAGGGAAATCCGACGTGCAATAGG
TGATGCAGCAATGCAGGATGGTCTGCTTGTCCTTCATTATGGTCTTGTGGTTTCTCCTCTGAAGATAACT
TGA

Translation (350 aa):
MEGVAVVTAGSVGAAKTEGAAALPPPPPVSPPALTPAPAAGEEGPAPLSETGAPGCSGSRPPELEPERSL
GRFRGRFEDEDEELEEEEELEEEEEEEEEDMSHFSLRLEGGRQDSEDEEERLINLSELTPYILCSICKGY
LIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLYNIRLDRQLQDIVYKLVINLEEREKKQM
HDFYKERGLEVPKPAVPQPVPSSKGRSKKVLESVFRIPPELDMSLLLEFIGANEGTGHFKPLEKKFVRVS
GEATIGHVEKFLRRKMGLDPACQVDIICGDHLLEQYQTLREIRRAIGDAAMQDGLLVLHYGLVVSPLKIT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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