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Report for CCDS3148.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3148.1 Public Homo sapiens 3 PFN2 22 109 92 CCDS HistoryNCBI Gene:5217Re-query CCDS DB by CCDS ID:3148.1Re-query CCDS DB by GeneID:5217See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3148.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENST00000239940.11 ENSP00000239940.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000239940.11Link to Ensembl Protein Viewer:ENSP00000239940.7Re-query CCDS DB by Nucleotide ID:ENST00000239940Re-query CCDS DB by Protein ID:ENSP00000239940
Original member NCBI NM_053024.3 NP_444252.1 Updated not alive Link to Nucleotide Sequence:NM_053024.3Link to Protein Sequence:NP_444252.1Re-query CCDS DB by Nucleotide ID:NM_053024Re-query CCDS DB by Protein ID:NP_444252
Current member NCBI NM_053024.4 NP_444252.1 Accepted alive Link to Nucleotide Sequence:NM_053024.4Link to Protein Sequence:NP_444252.1Re-query CCDS DB by Nucleotide ID:NM_053024Re-query CCDS DB by Protein ID:NP_444252Link to BLAST:NP_444252.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444252.1 140 P35080-1 140 100% 0 0

Chromosomal Locations for CCDS 3148.1

Assembly GRCh38.p12 (GCF_000001405.38)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 149966489 149966586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149968358 149968550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149970725 149970856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (423 nt):
ATGGCCGGTTGGCAGAGCTACGTGGATAACCTGATGTGCGATGGCTGCTGCCAGGAGGCCGCCATTGTCG
GC
TACTGCGACGCCAAATACGTCTGGGCAGCCACGGCCGGGGGCGTCTTTCAGAGCATTACGCCAATAGA
A
ATAGATATGATTGTAGGAAAAGACCGGGAAGGTTTCTTTACCAACGGTTTGACTCTTGGCGCGAAGAAA
TGC
TCAGTGATCAGAGATAGTCTATACGTCGATGGTGACTGCACAATGGACATCCGGACAAAGAGTCAAG
GT
GGGGAGCCAACATACAATGTGGCTGTCGGCAGAGCTGGTAGAGTCTTGGTCTTTGTAATGGGAAAAGA
A
GGGGTCCATGGAGGCGGATTGAATAAGAAGGCATACTCAATGGCAAAATACTTGAGAGACTCTGGGTTC
TAG


Translation (140 aa):
MAGWQSYVDNLMCDGCCQEAAIVGYCDAKYVWAATAGGVFQSITPIEIDMIVGKDREGFFTNGLTLGAKK
C
SVIRDSLYVDGDCTMDIRTKSQGGEPTYNVAVGRAGR
VLVFVMGKEGVHGGGLNKKAYSMAKYLRDSGF



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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