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Report for CCDS31654.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31654.1 Public Homo sapiens 11 CTSC 24 110 108 CCDS HistoryNCBI Gene:1075Re-query CCDS DB by CCDS ID:31654.1Re-query CCDS DB by GeneID:1075See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31654.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000524463.6 ENSP00000432541.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000524463.6Link to Ensembl Protein Viewer:ENSP00000432541.1Re-query CCDS DB by Nucleotide ID:ENST00000524463Re-query CCDS DB by Protein ID:ENSP00000432541
Original member Current member EBI ENST00000677106.1 ENSP00000504568.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000677106.1Link to Ensembl Protein Viewer:ENSP00000504568.1Re-query CCDS DB by Nucleotide ID:ENST00000677106Re-query CCDS DB by Protein ID:ENSP00000504568
Original member Current member NCBI NM_148170.5 NP_680475.1 Accepted alive Link to Nucleotide Sequence:NM_148170.5Link to Protein Sequence:NP_680475.1Re-query CCDS DB by Nucleotide ID:NM_148170Re-query CCDS DB by Protein ID:NP_680475Link to BLAST:NP_680475.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_680475.1 137 P53634-2 137 100% 0 0

Chromosomal Locations for CCDS 31654.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 88326433 88326443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 88328112 88328196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 88334937 88335082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 88337501 88337672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (414 nt):
ATGGGTGCTGGGCCCTCCTTGCTGCTCGCCGCCCTCCTGCTGCTTCTCTCCGGCGACGGCGCCGTGCGCT
GCGACACACCTGCCAACTGCACCTATCTTGACCTGCTGGGCACCTGGGTCTTCCAGGTGGGCTCCAGCGG
TTCCCAGCGCGATGTCAACTGCTCGGTTATGGGACCACAAGAAAAAAAAGTAGTGGTGTACCTTCAGAAG
CTGGATACAGCATATGATGACCTTGGCAATTCTGGCCATTTCACCATCATTTACAACCAAGGCTTTGAGA
TTGTGTTGAATGACTACAAGTGGTTTGCCTTTTTTAAGGATGTCACTGATTTTATCAGTCATTTGTTCAT
GCAGCTGGGAACTGTGGGGATATATGATTTGCCACATCTGAGGAACAAACTGGTTATTAAATAG

Translation (137 aa):
MGAGPSLLLAALLLLLSGDGAVRCDTPANCTYLDLLGTWVFQVGSSGSQRDVNCSVMGPQEKKVVVYLQK
LDTAYDDLGNSGHFTIIYNQGFEIVLNDYKWFAFFKDVTDFISHLFMQLGTVGIYDLPHLRNKLVIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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