NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS31909.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31909.1 Public Homo sapiens 12 SLC8B1 24 110 108 CCDS HistoryNCBI Gene:80024Re-query CCDS DB by CCDS ID:31909.1Re-query CCDS DB by GeneID:80024See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31909.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000202831.7 ENSP00000202831.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000202831.7Link to Ensembl Protein Viewer:ENSP00000202831.3Re-query CCDS DB by Nucleotide ID:ENST00000202831Re-query CCDS DB by Protein ID:ENSP00000202831
Original member Current member EBI ENST00000552014.5 ENSP00000447091.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000552014.5Link to Ensembl Protein Viewer:ENSP00000447091.1Re-query CCDS DB by Nucleotide ID:ENST00000552014Re-query CCDS DB by Protein ID:ENSP00000447091
Original member Current member EBI ENST00000680972.1 ENSP00000506377.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000680972.1Link to Ensembl Protein Viewer:ENSP00000506377.1Re-query CCDS DB by Nucleotide ID:ENST00000680972Re-query CCDS DB by Protein ID:ENSP00000506377
Original member Current member NCBI NM_001358345.2 NP_001345274.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001358345.2Link to Protein Sequence:NP_001345274.1Re-query CCDS DB by Nucleotide ID:NM_001358345Re-query CCDS DB by Protein ID:NP_001345274Link to BLAST:NP_001345274.1
Original member Current member NCBI NM_024959.4 NP_079235.2 Accepted alive Link to Nucleotide Sequence:NM_024959.4Link to Protein Sequence:NP_079235.2Re-query CCDS DB by Nucleotide ID:NM_024959Re-query CCDS DB by Protein ID:NP_079235Link to BLAST:NP_079235.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345274.1 584 Q6J4K2-1 584 100% 0 0
NP_079235.2 584 Q6J4K2-1 584 100% 0 0

Chromosomal Locations for CCDS 31909.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 113299777 113299974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113304321 113304385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113306495 113306575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113307691 113307844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113310234 113310355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113315335 113315476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113316526 113316656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113316942 113317001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113318964 113319071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113320331 113320498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113320581 113320686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113320850 113320907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113321056 113321108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113321196 113321348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113332723 113332878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1755 nt):
ATGGCCGGCAGAAGGCTGAATCTGCGCTGGGCACTGAGTGTGCTTTGTGTGCTGCTAATGGCGGAGACAG
TGTCTGGGACTAGGGGCTCGTCTACAGGAGCTCACATTAGCCCCCAGTTTCCAGCTTCAGGTGTGAACCA
GACCCCCGTGGTAGACTGCCGCAAGGTGTGTGGCCTGAATGTCTCTGACCGCTGTGACTTCATCCGGACC
AACCCTGACTGCCACAGTGATGGGGGGTACCTGGACTACCTGGAAGGCATCTTCTGCCACTTCCCTCCCA
GCCTCCTCCCTCTGGCTGTCACTCTCTACGTTTCCTGGCTGCTCTACCTGTTTCTGATTCTGGGAGTCAC
CGCAGCCAAGTTTTTCTGCCCCAACTTGTCGGCCATTTCTACCACACTGAAGCTCTCCCACAACGTGGCA
GGCGTCACCTTCCTGGCATTTGGGAATGGTGCACCTGACATCTTCAGTGCCCTGGTGGCCTTCTCTGACC
CGCACACAGCCGGCCTGGCCCTTGGGGCACTGTTTGGCGCTGGCGTGCTGGTTACCACAGTGGTGGCCGG
AGGCATTACCATCCTACACCCCTTCATGGCTGCCTCCAGGCCCTTCTTCAGGGACATCGTTTTCTACATG
GTGGCTGTGTTCCTGACCTTCCTCATGCTCTTCCGTGGCAGGGTCACCCTGGCATGGGCTCTGGGTTACC
TGGGCTTGTATGTGTTCTATGTGGTCACTGTGATTCTCTGCACCTGGATCTACCAACGGCAACGGAGAGG
ATCTCTGTTCTGCCCCATGCCAGTTACTCCAGAGATCCTCTCAGACTCCGAGGAGGACCGGGTATCTTCT
AATACCAACAGCTATGACTACGGTGATGAGTACCGGCCGCTGTTCTTCTACCAGGAGACCACGGCTCAGA
TCCTGGTCCGGGCCCTCAATCCCCTGGATTACATGAAGTGGAGAAGGAAATCAGCATACTGGAAAGCCCT
CAAGGTGTTCAAGCTGCCTGTGGAGTTCCTGCTGCTCCTCACAGTCCCCGTCGTGGACCCGGACAAGGAT
GACCAGAACTGGAAACGGCCCCTCAACTGTCTGCATCTGGTTATCAGCCCCCTGGTTGTGGTCCTGACCC
TGCAGTCGGGGACCTATGGTGTCTATGAGATAGGCGGCCTCGTTCCCGTCTGGGTCGTGGTGGTGATCGC
AGGCACAGCCTTGGCTTCAGTGACCTTTTTTGCCACATCTGACAGCCAGCCCCCCAGGCTTCACTGGCTC
TTTGCTTTCCTGGGCTTTCTGACCAGCGCCCTGTGGATCAACGCGGCCGCCACAGAGGTGGTGAACATCT
TGCGGTCCCTGGGTGTGGTCTTCCGGCTGAGCAACACTGTGCTGGGGCTCACGCTGCTGGCCTGGGGGAA
CAGCATTGGAGATGCCTTCTCGGATTTCACACTGGCTCGCCAGGGCTACCCACGGATGGCGTTCTCCGCC
TGCTTTGGCGGCATCATCTTCAACATCCTCGTGGGTGTGGGGCTGGGCTGCCTGCTCCAGATCTCCCGAA
GCCACACAGAAGTGAAGCTGGAGCCAGACGGACTGCTGGTGTGGGTCCTGGCAGGCGCCCTGGGGCTCAG
CCTCGTCTTCTCCCTGGTCTCAGTCCCATTGCAGTGCTTCCAGCTCAGCAGAGTCTATGGCTTCTGCCTG
CTCCTCTTCTACCTGAACTTCCTTGTCGTGGCCCTCCTCACTGAATTTGGAGTGATTCACCTGAAAAGCA
TGTGA

Translation (584 aa):
MAGRRLNLRWALSVLCVLLMAETVSGTRGSSTGAHISPQFPASGVNQTPVVDCRKVCGLNVSDRCDFIRT
NPDCHSDGGYLDYLEGIFCHFPPSLLPLAVTLYVSWLLYLFLILGVTAAKFFCPNLSAISTTLKLSHNVA
GVTFLAFGNGAPDIFSALVAFSDPHTAGLALGALFGAGVLVTTVVAGGITILHPFMAASRPFFRDIVFYM
VAVFLTFLMLFRGRVTLAWALGYLGLYVFYVVTVILCTWIYQRQRRGSLFCPMPVTPEILSDSEEDRVSS
NTNSYDYGDEYRPLFFYQETTAQILVRALNPLDYMKWRRKSAYWKALKVFKLPVEFLLLLTVPVVDPDKD
DQNWKRPLNCLHLVISPLVVVLTLQSGTYGVYEIGGLVPVWVVVVIAGTALASVTFFATSDSQPPRLHWL
FAFLGFLTSALWINAAATEVVNILRSLGVVFRLSNTVLGLTLLAWGNSIGDAFSDFTLARQGYPRMAFSA
CFGGIIFNILVGVGLGCLLQISRSHTEVKLEPDGLLVWVLAGALGLSLVFSLVSVPLQCFQLSRVYGFCL
LLFYLNFLVVALLTEFGVIHLKSM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH