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Report for CCDS32196.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32196.1 Public Homo sapiens 15 BMF 24 110 108 CCDS HistoryNCBI Gene:90427Re-query CCDS DB by CCDS ID:32196.1Re-query CCDS DB by GeneID:90427See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32196.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000558774.5 ENSP00000453913.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000558774.5Link to Ensembl Protein Viewer:ENSP00000453913.1Re-query CCDS DB by Nucleotide ID:ENST00000558774Re-query CCDS DB by Protein ID:ENSP00000453913
Original member Current member EBI ENST00000559701.5 ENSP00000453919.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000559701.5Link to Ensembl Protein Viewer:ENSP00000453919.1Re-query CCDS DB by Nucleotide ID:ENST00000559701Re-query CCDS DB by Protein ID:ENSP00000453919
Original member Current member NCBI NM_001003943.3 NP_001003943.1 Accepted alive Link to Nucleotide Sequence:NM_001003943.3Link to Protein Sequence:NP_001003943.1Re-query CCDS DB by Nucleotide ID:NM_001003943Re-query CCDS DB by Protein ID:NP_001003943Link to BLAST:NP_001003943.1
Original member Current member NCBI NM_001398508.1 NP_001385437.1 Accepted alive Link to Nucleotide Sequence:NM_001398508.1Link to Protein Sequence:NP_001385437.1Re-query CCDS DB by Nucleotide ID:NM_001398508Re-query CCDS DB by Protein ID:NP_001385437Link to BLAST:NP_001385437.1
Original member Current member NCBI NM_001398509.1 NP_001385438.1 Accepted alive Link to Nucleotide Sequence:NM_001398509.1Link to Protein Sequence:NP_001385438.1Re-query CCDS DB by Nucleotide ID:NM_001398509Re-query CCDS DB by Protein ID:NP_001385438Link to BLAST:NP_001385438.1
Original member Current member NCBI NM_001398510.1 NP_001385439.1 Accepted alive Link to Nucleotide Sequence:NM_001398510.1Link to Protein Sequence:NP_001385439.1Re-query CCDS DB by Nucleotide ID:NM_001398510Re-query CCDS DB by Protein ID:NP_001385439Link to BLAST:NP_001385439.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001003943.1 129 Q96LC9-3 129 100% 0 0
NP_001385437.1 129 Q96LC9-3 129 100% 0 0
NP_001385438.1 129 Q96LC9-3 129 100% 0 0
NP_001385439.1 129 Q96LC9-3 129 100% 0 0

Chromosomal Locations for CCDS 32196.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 40091791 40091888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 40105795 40106086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (390 nt):
ATGGAGCCATCTCAGTGTGTGGAGGAGCTGGAGGATGATGTGTTCCAACCAGAGGATGGGGAGCCGGTGA
CCCAACCCGGGAGCTTGCTCTCTGCTGACCTGTTTGCCCAGAGCCTACTGGACTGCCCCCTCAGCCGACT
TCAGCTCTTCCCTCTCACCCACTGCTGTGGCCCTGGCCTTCGACCCACCAGCCAGGAAGACAAAGCTACC
CAGACTCTCAGCCCAGCCTCCCCCAGCCAAGGTGTCATGCTGCCTTGTGGGGTGACTGAGGAACCCCAGC
GACTCTTTTATGCACCAGCAGAACCAAAATCGTGTGTGGTGGCAGATCCTCCTCTTCCTGCACAACCTTG
CTTTGAATGGAGAAGAGAACAGGAACGGGGCAGGCCCTAG

Translation (129 aa):
MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGLRPTSQEDKAT
QTLSPASPSQGVMLPCGVTEEPQRLFYAPAEPKSCVVADPPLPAQPCFEWRREQERGRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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