CCDS Report for Consensus CDS

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Report for CCDS32200.2 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
32200.2	Public	Homo sapiens	15	RTF1	24	110	108

Public Note for CCDS 32200.1

The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data or publications. The longer protein encoded by this updated coding region is consistent with the Rtf1 Plus3 domain shown in PMID:18184592 (Figure 1). The translation start AUG codon in the update has a weak Kozak sequence, while a downstream AUG (amino acid 41) has a stronger Kozak sequence so it is possible that sometimes ribosomes may start translation at the downstream AUG due to leaky scanning.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 32200.2

Original	Current	Source	Nucleotide ID	Protein ID	MANE	Status in CCDS	Seq. Status	Links
		EBI	ENST00000389629.9	ENSP00000374280.4	MANE Select	Accepted	alive
		NCBI	NM_015138.5	NP_055953.3	MANE Select	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_055953.3	710	Q92541	710	100%	0	0

Chromosomal Locations for CCDS 32200.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)

Genome Browser links:

Chromosome	Start	Stop
15	41417116	41417313
15	41438321	41438431
15	41452901	41453048
15	41457672	41457876
15	41464771	41464885
15	41466141	41466252
15	41470257	41470392
15	41471172	41471349
15	41474620	41474702
15	41475525	41475612
15	41475712	41475819
15	41476446	41476523
15	41477165	41477286
15	41477458	41477515
15	41478548	41478625
15	41479103	41479198
15	41480214	41480325
15	41480581	41480687

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2133 nt):
ATGCGCGGTCGCCTTTGTGTGGGTCGAGCAGCGGCGGCGGCGGCGGCAGTGGCGGTCCCACTGGCAGGCG GGCAAGAGGGGAGTCCGGGCGGCGGCCGGCGTGGGAGCCGGGGGACCACCATGGTAAAGAAGCGGAAAGG CCGCGTCGTGATCGACTCGGACACAGAGGACAGCGGCAGCGACGAGAACCTGGATCAGGAGCTCTTGTCC CTGGCAAAGCGAAAGCGCAGTGACTCTGAGGAGAAGGAGCCGCCTGTGAGTCAGCCTGCAGCCTCGTCAG ACTCGGAGACGTCTGACAGTGACGATGAGTGGACATTTGGGAGCAATAAAAATAAGAAGAAAGGAAAAGC CAGAAAAATAGAGAAGAAAGGAACCATGAAGAAACAGGCCAACAAAACTGCCTCCTCAGGCAGTTCAGAC AAAGACAGTTCAGCTGAGAGCTCAGCCCCTGAGGAAGGTGAAGTGTCAGACTCTGACAGCAACAGCTCCT CTTCCAGTTCAGATTCAGACTCTTCCTCAGAAGATGAAGAGTTCCATGATGGCTATGGAGAAGACCTCAT GGGAGATGAGGAAGACAGGGCCCGTCTGGAACAGATGACAGAGAAAGAGAGAGAGCAAGAACTGTTCAAT CGCATAGAGAAGAGGGAGGTGTTGAAAAGAAGATTTGAAATCAAGAAAAAACTAAAAACAGCCAAAAAGA AAGAAAAGAAAGAAAAGAAGAAAAAGCAAGAAGAGGAGCAAGAAAAGAAAAAACTGACACAGATTCAAGA ATCTCAGGTAACATCCCACAACAAGGAACGGCGTTCCAAGCGGGATGAGAAACTAGACAAGAAATCTCAA GCCATGGAGGAGCTAAAAGCAGAGCGAGAAAAACGAAAGAACAGAACAGCTGAGCTCCTTGCCAAAAAAC AGCCATTAAAAACCAGTGAGGTCTACTCTGATGATGAAGAGGAGGAAGAGGATGACAAATCCAGTGAAAA GTCAGACCGCTCATCACGAACATCATCGTCTGATGAAGAAGAGGAGAAAGAAGAGATCCCTCCCAAATCC CAACCAGTTTCCTTACCTGAAGAATTGAATCGGGTTCGATTATCACGGCATAAGCTAGAACGCTGGTGTC ACATGCCCTTCTTTGCTAAAACTGTCACAGGATGTTTTGTGCGGATTGGCATCGGAAACCACAACAGCAA ACCAGTTTACCGGGTCGCTGAGATTACGGGTGTTGTGGAAACTGCCAAAGTTTACCAACTAGGTGGCACC AGAACAAACAAAGGGCTGCAACTACGGCATGGCAATGACCAACGCGTGTTCCGTTTAGAGTTTGTCTCAA ACCAAGAATTCACCGAAAGTGAGTTTATGAAGTGGAAAGAAGCGATGTTCTCTGCTGGCATGCAGTTGCC CACTCTAGATGAAATCAATAAAAAGGAATTATCTATTAAAGAAGCTCTTAATTATAAATTCAATGATCAG GACATTGAAGAGATTGTAAAAGAGAAAGAAAGGTTCAGAAAAGCTCCACCCAACTACGCTATGAAGAAGA CTCAGCTACTGAAGGAAAAGGCCATGGCTGAGGACCTGGGGGATCAGGACAAGGCCAAACAAATCCAAGA TCAACTGAATGAGCTGGAGGAACGGGCAGAGGCCCTGGACCGCCAGCGGACCAAGAACATATCCGCTATC AGTTACATCAACCAGCGGAACCGGGAGTGGAACATTGTAGAGTCTGAGAAGGCCCTTGTGGCTGAAAGTC ACAACATGAAAAACCAACAGATGGATCCCTTTACTCGGCGGCAGTGCAAGCCTACCATCGTTTCTAATTC CAGAGACCCAGCTGTTCAAGCTGCCATCTTGGCCCAGCTGAATGCAAAATACGGTTCTGGAGTGTTACCA GATGCTCCAAAGGAAATGAGCAAGGGTCAAGGCAAAGATAAAGATTTGAATTCTAAGTCAGCCAGTGACC TCTCAGAAGATCTGTTCAAAGTACACGATTTTGATGTGAAGATTGACTTACAAGTTCCCAGCTCAGAGTC AAAGGCTTTAGCCATCACCTCCAAGGCTCCGCCAGCCAAGGATGGGGCTCCAAGGAGATCTCTGAACTTG GAAGACTACAAAAAACGACGAGGGCTTATTTGA
Translation (710 aa):
MRGRLCVGRAAAAAAAVAVPLAGGQEGSPGGGRRGSRGTTMVKKRKGRVVIDSDTEDSGSDENLDQELLS LAKRKRSDSEEKEPPVSQPAASSDSETSDSDDEWTFGSNKNKKKGKARKIEKKGTMKKQANKTASSGSSD KDSSAESSAPEEGEVSDSDSNSSSSSSDSDSSSEDEEFHDGYGEDLMGDEEDRARLEQMTEKEREQELFN RIEKREVLKRRFEIKKKLKTAKKKEKKEKKKKQEEEQEKKKLTQIQESQVTSHNKERRSKRDEKLDKKSQ AMEELKAEREKRKNRTAELLAKKQPLKTSEVYSDDEEEEEDDKSSEKSDRSSRTSSSDEEEEKEEIPPKS QPVSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVYQLGGT RTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEALNYKFNDQ DIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAI SYINQRNREWNIVESEKALVAESHNMKNQQMDPFTRRQCKPTIVSNSRDPAVQAAILAQLNAKYGSGVLP DAPKEMSKGQGKDKDLNSKSASDLSEDLFKVHDFDVKIDLQVPSSESKALAITSKAPPAKDGAPRRSLNL EDYKKRRGLI

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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