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Report for CCDS32393.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32393.1 Public Homo sapiens 16 PDXDC1 22 109 92 CCDS HistoryNCBI Gene:23042Re-query CCDS DB by CCDS ID:32393.1Re-query CCDS DB by GeneID:23042See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32393.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396410.8 ENSP00000379691.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396410.8Link to Ensembl Protein Viewer:ENSP00000379691.4Re-query CCDS DB by Nucleotide ID:ENST00000396410Re-query CCDS DB by Protein ID:ENSP00000379691
Original member NCBI NM_015027.3 NP_055842.2 Updated not alive Link to Nucleotide Sequence:NM_015027.3Link to Protein Sequence:NP_055842.2Re-query CCDS DB by Nucleotide ID:NM_015027Re-query CCDS DB by Protein ID:NP_055842
Current member NCBI NM_015027.4 NP_055842.2 Accepted alive Link to Nucleotide Sequence:NM_015027.4Link to Protein Sequence:NP_055842.2Re-query CCDS DB by Nucleotide ID:NM_015027Re-query CCDS DB by Protein ID:NP_055842Link to BLAST:NP_055842.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055842.2 788 Q6P996-1 788 100% 0 0

Chromosomal Locations for CCDS 32393.1

Assembly GRCh38.p12 (GCF_000001405.38)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 14975200 14975220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14997753 14997826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14998340 14998405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15001776 15001856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15004187 15004333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15006394 15006583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15008779 15008847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15009681 15009759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15016129 15016213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15017120 15017168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15017321 15017422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15018840 15018965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15022704 15022754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15026643 15026706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15028878 15028966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15029951 15030056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15031735 15031906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15032861 15032979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15033278 15033399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15034286 15034378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15034457 15034553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15035449 15035553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15036016 15036275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2367 nt):
ATGGACGCGTCCCTGGAGAAGATAGCAGACCCCACGTTAGCTGAAATGGGAAAAAACTTGAAGGAGGCAG
TG
AAGATGCTGGAGGACAGTCAGAGAAGAACAGAAGAGGAAAATGGAAAGAAGCTCATATCCGGAGATAT
T
CCAGGCCCACTCCAGGGCAGTGGGCAAGATATGGTGAGCATCCTCCAGTTAGTTCAGAATCTCATGCAT
GGA
GATGAAGATGAGGAGCCCCAGAGCCCCAGAATCCAAAATATTGGAGAACAAGGTCATATGGCTTTGT
TG
GGACATAGTCTGGGAGCTTATATTTCAACTCTGGACAAAGAGAAGCTGAGAAAACTTACAACTAGGAT
A
CTTTCAGATACCACCTTATGGCTATGCAGAATTTTCAGATATGAAAATGGGTGTGCTTATTTCCACGAA
GAG
GAAAGAGAAGGACTTGCAAAGATATGTAGGCTTGCCATTCATTCTCGATATGAAGACTTCGTAGTGG
AT
GGCTTCAATGTGTTATATAACAAGAAGCCTGTCATATATCTTAGTGCTGCTGCTAGACCTGGCCTGGG
C
CAATACCTTTGTAATCAGCTCGGCTTGCCCTTCCCCTGCTTGTGCCGTGTACCCTGTAACACTGTGTTT
GGA
TCCCAGCATCAGATGGATGTTGCCTTCCTGGAGAAACTGATTAAAGATGATATAGAGCGAGGAAGAC
TG
CCCCTGTTGCTTGTCGCAAATGCAGGAACGGCAGCAGTAGGACACACAGACAAGATTGGGAGATTGAA
A
GAACTCTGTGAGCAGTATGGCATATGGCTTCATGTGGAGGGTGTGAATCTGGCAACATTGGCTCTGGGT
TAT
GTCTCCTCATCAGTGCTGGCTGCAGCCAAATGTGATAGCATGACGATGACTCCTGGCCCGTGGCTGG
GT
TTGCCAGCTGTTCCTGCGGTGACACTGTATAAACACGATGACCCTGCCTTGACTTTAGTTGCTGGTCT
T
ACATCAAATAAGCCCACAGACAAACTCCGTGCCCTGCCTCTGTGGTTATCTTTACAATACTTGGGACTT
GAT
GGGTTTGTGGAGAGGATCAAGCATGCCTGTCAACTGAGTCAACGGTTGCAGGAAAGTTTGAAGAAAG
TG
AATTACATCAAAATCTTGGTGGAAGATGAGCTCAGCTCCCCAGTGGTGGTGTTCAGATTTTTCCAGGA
A
TTACCAGGCTCAGATCCGGTGTTTAAAGCCGTCCCAGTGCCCAACATGACACCTTCAGGAGTCGGCCGG
GAG
AGGCACTCGTGTGACGCGCTGAATCGCTGGCTGGGAGAACAGCTGAAGCAGCTGGTGCCTGCAAGCG
GC
CTCACAGTCATGGATCTGGAAGCTGAGGGCACGTGTTTGCGGTTCAGCCCTTTGATGACCGCAGCAGT
T
TTAGGAACTCGGGGAGAGGATGTGGATCAGCTCGTAGCCTGCATAGAAAGCAAACTGCCAGTGCTGTGC
TGT
ACGCTCCAGTTGCGTGAAGAGTTCAAGCAGGAAGTGGAAGCAACAGCAGGTCTCCTATATGTTGATG
AC
CCTAACTGGTCTGGAATAGGGGTTGTCAGGTATGAACATGCTAATGATGATAAGAGCAGTTTGAAATC
A
GATCCCGAAGGGGAAAACATCCATGCTGGACTCCTGAAGAAGTTAAATGAACTGGAATCTGACCTAACC
TTT
AAAATAGGCCCTGAGTATAAGAGCATGAAGAGCTGCCTTTATGTCGGCATGGCGAGCGACAACGTCG
AT
GCTGCTGAGCTCGTGGAGACCATTGCGGCCACAGCCCGGGAGATAGAGGAGAACTCGAGGCTTCTGGA
A
AACATGACAGAAGTGGTTCGGAAAGGCATTCAGGAAGCTCAAGTGGAGCTGCAGAAGGCAAGTGAAGAA
CGG
CTTCTGGAAGAGGGGGTGTTGCGGCAGATCCCTGTAGTGGGCTCCGTGCTGAATTGGTTTTCTCCGG
TC
CAGGCTTTACAGAAGGGAAGAACTTTTAACTTGACAGCAGGCTCTCTGGAGTCCACAGAACCCATATA
T
GTCTACAAAGCACAAGGTGCAGGAGTCACGCTGCCTCCAACGCCCTCGGGCAGTCGCACCAAGCAGAGG
CTT
CCAGGCCAGAAGCCTTTTAAAAGGTCCCTGCGAGGTTCAGATGCTTTGAGTGAGACCAGCTCAGTCA
GT
CACATTGAAGACTTAGAAAAGGTGGAGCGCCTATCCAGTGGGCCGGAGCAGATCACCCTCGAGGCCAG
C
AGCACTGAGGGACACCCAGGGGCTCCCAGCCCTCAGCACACCGACCAGACCGAGGCCTTCCAGAAAGGG
GTC
CCACACCCAGAAGATGACCACTCACAGGTAGAAGGACCGGAGAGCTTAAGATGA


Translation (788 aa):
MDASLEKIADPTLAEMGKNLKEAVKMLEDSQRRTEEENGKKLISGDIPGPLQGSGQDMVSILQLVQNLMH
G
DEDEEPQSP
RIQNIGEQGHMALLGHSLGAYISTLDKEKLRKLTTRILSDTTLWLCRIFRYENGCAYFHE
E
EREGLAKICRLAIHSRYEDFVVDGFNVLYNKKPVIYLSAAARPGLGQYLCNQ
LGLPFPCLCRVPCNTVF
G
SQHQM
DVAFLEKLIKDDIERGRLPLLLVANAGTAAVGHTDKIGRLKELCEQYGIWLHVEGVNLATLALG
Y
VSSSVL
AAAKCDSMTMTPGPWLGLPAVPAVTLYKHDDPALTLVAGLTSNKPTDKLRALPLWLSLQYLGL
D
GFVERIKHACQL
SQRLQESLKKVNYIKILVEDELSSPVVVFRFFQELPGSDPVFKAVPVPNMTPSGVGR
E
RHSCDALNRW
LGEQLKQLVPASGLTVMDLEAEGTCLRFSPLMTAAVLGTRGEDVDQLVACIESKLPVLC
C
TLQLREEFKQEVEATAGLLYVDDPNWSGIGVV
RYEHANDDKSSLKSDPEGENIHAGLLKKLNELESDLT
F
KI
GPEYKSMKSCLYVGMASDNVDAAELVETIAATAREIEENSRLLENMTEVVRKGIQEAQVELQKASEE
R
LLEE
GVLRQIPVVGSVLNWFSPVQALQKGRTFNLTAGSLESTEPIYVYKAQGAGVTLPPTPSGSRTKQR
L
P
GQKPFKRSLRGSDALSETSSVSHIEDLEKVERLSSGPEQITLEASSTEGHPGAPSPQHTDQTEAFQKG
V
PHPEDDHSQVEGPESLR




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser