NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS32823.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32823.1 Public Homo sapiens 18 ARK2C 24 110 108 CCDS HistoryNCBI Gene:494470Re-query CCDS DB by CCDS ID:32823.1Re-query CCDS DB by GeneID:494470See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32823.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000269439.12 ENSP00000269439.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000269439.12Link to Ensembl Protein Viewer:ENSP00000269439.6Re-query CCDS DB by Nucleotide ID:ENST00000269439Re-query CCDS DB by Protein ID:ENSP00000269439
Original member Current member NCBI NM_152470.3 NP_689683.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152470.3Link to Protein Sequence:NP_689683.2Re-query CCDS DB by Nucleotide ID:NM_152470Re-query CCDS DB by Protein ID:NP_689683Link to BLAST:NP_689683.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689683.2 346 Q6ZSG1-1 346 100% 0 0

Chromosomal Locations for CCDS 32823.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 46334275 46334335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46433190 46433505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46435289 46435396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46447563 46447692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46450296 46450400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46450704 46450799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46455974 46456080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46456519 46456636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1041 nt):
ATGGTCCTGGTCCACGTCGGCTATCTCGTGCTTCCAGTGTTTGGCTCTGTGCGAAACAGAGGTGCCCCCT
TTCAAAGGTCTCAGCATCCTCACGCTACCTCCTGCCGCCACTTCCACCTGGGCCCCCCGCAGCCGCAGCA
GCTCGCTCCCGACTTCCCGCTGGCCCACCCCGTGCAGTCGCAGCCAGGCCTCAGCGCCCACATGGCCCCG
GCCCACCAGCACAGCGGCGCCCTGCACCAGTCGCTGACCCCGCTGCCCACCCTGCAGTTCCAGGACGTCA
CAGGTCCCTCCTTCCTACCTCAGGCCCTGCACCAGCAATACCTCCTGCAGCAGCAGCTCCTGGAAGCCCA
GCACCGCAGGCTGGTCTCGCACCCCAGGCGGAGTCAGGAGCGTGTATCTGTCCACCCCCACCGCCTCCAT
CCCAGCTTCGACTTCGGCCAACTGCAGACACCTCAGCCCAGGTATTTGGCTGAGGGCACTGACTGGGATC
TCAGTGTGGATGCTGGCTTGAGTCCTGCTCAGTTCCAGGTGCGGCCCATCCCTCAGCACTATCAGCATTA
CCTAGCCACTCCTCGAATGCACCACTTTCCCAGAAACTCCTCCTCCACACAGATGGTCGTCCATGAAATC
CGAAACTACCCTTACCCTCAGCTTCACTTCCTTGCTCTCCAGGGACTAAATCCCAGCAGACACACCTCCG
CCGTACGGGAGAGCTATGAGGAGCTGCTGCAGCTCGAGGACAGGTTGGGTAATGTGACTCGGGGAGCTGT
ACAGAACACCATTGAGAGGTTCACCTTCCCCCACAAGTATAAGAAGCGAAGACCCCAGGATGGCAAGGGC
AAGAAGGATGAGGGGGAGGAGTCAGACACAGATGAGAAATGCACAATTTGTCTGTCTATGCTGGAAGATG
GAGAAGATGTGAGACGCCTACCCTGTATGCATCTCTTTCACCAACTGTGCGTGGACCAGTGGCTCGCCAT
GAGCAAGAAATGCCCCATCTGCCGAGTGGACATTGAGACACAACTGGGAGCCGACAGCTGA

Translation (346 aa):
MVLVHVGYLVLPVFGSVRNRGAPFQRSQHPHATSCRHFHLGPPQPQQLAPDFPLAHPVQSQPGLSAHMAP
AHQHSGALHQSLTPLPTLQFQDVTGPSFLPQALHQQYLLQQQLLEAQHRRLVSHPRRSQERVSVHPHRLH
PSFDFGQLQTPQPRYLAEGTDWDLSVDAGLSPAQFQVRPIPQHYQHYLATPRMHHFPRNSSSTQMVVHEI
RNYPYPQLHFLALQGLNPSRHTSAVRESYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDGKG
KKDEGEESDTDEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDIETQLGADS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH