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Report for CCDS33214.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33214.2 Public Homo sapiens 2 ARHGAP25 24 110 108 CCDS HistoryNCBI Gene:9938Re-query CCDS DB by CCDS ID:33214.2Re-query CCDS DB by GeneID:9938See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 33214.1
The coding region has been updated to represent an alternative splice site that is more supported by the available transcript and protein data.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 33214.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409202.8 ENSP00000386911.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000409202.8Link to Ensembl Protein Viewer:ENSP00000386911.3Re-query CCDS DB by Nucleotide ID:ENST00000409202Re-query CCDS DB by Protein ID:ENSP00000386911
Original member Current member NCBI NM_001007231.3 NP_001007232.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001007231.3Link to Protein Sequence:NP_001007232.2Re-query CCDS DB by Nucleotide ID:NM_001007231Re-query CCDS DB by Protein ID:NP_001007232Link to BLAST:NP_001007232.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007232.2 646 P42331-4 646 100% 0 0

Chromosomal Locations for CCDS 33214.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 68735200 68735260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68775221 68775420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68782233 68782320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68787840 68787956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68807273 68807480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68813287 68813419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68816289 68816362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68817873 68817994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68819123 68819319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68822340 68822872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68825987 68826194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1941 nt):
ATGTCCCTAAAATTGCCAAGGAACTGGGATTTCAACCTGAAAGTGGAGGCTGCGAAAATAGCTCGGTCAA
GGAGTGTGATGACTGGCGAGCAGATGGCTGCCTTCCATCCATCGTCCACCCCCAACCCGCTGGAGAGGCC
CATCAAGATGGGCTGGCTGAAGAAGCAGAGGTCCATCGTGAAGAACTGGCAGCAGAGGTACTTTGTGCTG
AGGGCGCAGCAGCTCTACTACTACAAGGATGAAGAGGACACGAAGCCCCAGGGCTGCATGTATCTACCAG
GATGTACAATCAAGGAGATCGCCACAAACCCAGAAGAAGCTGGGAAGTTTGTCTTTGAAATCATTCCAGC
CTCATGGGACCAGAATCGCATGGGACAGGACTCCTATGTCCTCATGGCCAGCTCTCAGGCGGAGATGGAG
GAGTGGGTTAAATTCCTCAGGAGAGTTGCTGGCACACCCTGTGGAGCAGTGTTTGGCCAGCGCTTGGATG
AGACTGTGGCCTATGAACAGAAATTCGGCCCCCATCTGGTGCCCATCCTGGTGGAGAAATGTGCAGAGTT
CATCCTGGAGCACGGCCGGAATGAAGAGGGCATCTTCCGTCTGCCTGGGCAGGACAACCTGGTGAAGCAG
CTGAGAGACGCTTTTGATGCTGGGGAGCGGCCCTCCTTTGACAGAGACACAGATGTGCACACTGTGGCTT
CCCTGTTAAAGCTCTACCTCCGAGACCTCCCAGAGCCCGTGGTTCCCTGGAGCCAGTACGAAGGGTTCCT
GCTCTGTGGGCAGCTCACGAATGCGGATGAGGCAAAGGCTCAGCAGGAGTTGATGAAGCAGCTCTCCATC
CTTCCTCGTGACAACTATAGTCTCCTGAGCTACATCTGCAGGTTCCTACATGAAATACAGCTGAACTGTG
CTGTTAACAAGATGAGTGTGGACAACCTGGCTACTGTGATTGGTGTGAATCTCATCAGGTCGAAGGTCGA
AGACCCTGCCGTGATCATGAGAGGGACTCCTCAGATCCAAAGAGTGATGACTATGATGATCAGAGACCAT
GAAGTCCTCTTCCCCAAGTCCAAGGATATACCCCTGTCACCCCCTGCCCAGAAAAATGACCCCAAGAAAG
CTCCAGTGGCCCGAAGCTCTGTAGGCTGGGATGCCACTGAAGACCTCCGAATTTCTAGGACAGACAGCTT
CAGTAGCATGACAAGCGACTCTGATACAACCAGCCCCACCGGACAGCAGCCGAGCGATGCGTTTCCGGAG
GACAGCAGCAAAGTACCCAGGGAAAAGCCAGGAGACTGGAAAATGCAATCTCGTAAAAGGACTCAAACAC
TCCCTAACCGGAAATGTTTCTTGACATCAGCTTTTCAGGGTGCCAACAGCAGCAAAATGGAGATCTTTAA
AAATGAATTCTGGTCGCCTTCCTCAGAGGCTAAGGCAGGGGAAGGGCACAGGAGAACGATGTCTCAAGAC
TTGCGCCAACTTTCTGACTCCCAACGGACTTCCACCTACGATAACGTCCCTTCCCTGCCAGGGTCCCCTG
GGGAGGAAGCCAGTGCACTCTCTTCCCAAGCCTGTGACTCCAAGGGAGATACTCTTGCCAGTCCAAACTC
TGAAACTGGGCCTGGAAAAAAGAACTCTGGAGAAGAGGAAATTGATTCTTTGCAGAGGATGGTCCAAGAG
CTACGAAAGGAAATAGAAACACAGAAGCAAATGTATGAGGAACAGATTAAAAACCTTGAGAAGGAAAATT
ATGACGTTTGGGCTAAAGTGGTGAGGCTCAATGAAGAACTGGAGAAGGAAAAGAAGAAGTCTGCAGCCCT
AGAGATCAGCCTCCGCAACATGGAGCGCTCCCGGGAGGATGTTGAGAAGAGGAACAAGGCCTTGGAAGAA
GAAGTCAAGGAATTTGTCAAATCCATGAAGGAACCCAAGACCGAGGCTTAA

Translation (646 aa):
MSLKLPRNWDFNLKVEAAKIARSRSVMTGEQMAAFHPSSTPNPLERPIKMGWLKKQRSIVKNWQQRYFVL
RAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEME
EWVKFLRRVAGTPCGAVFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGRNEEGIFRLPGQDNLVKQ
LRDAFDAGERPSFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCGQLTNADEAKAQQELMKQLSI
LPRDNYSLLSYICRFLHEIQLNCAVNKMSVDNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDH
EVLFPKSKDIPLSPPAQKNDPKKAPVARSSVGWDATEDLRISRTDSFSSMTSDSDTTSPTGQQPSDAFPE
DSSKVPREKPGDWKMQSRKRTQTLPNRKCFLTSAFQGANSSKMEIFKNEFWSPSSEAKAGEGHRRTMSQD
LRQLSDSQRTSTYDNVPSLPGSPGEEASALSSQACDSKGDTLASPNSETGPGKKNSGEEEIDSLQRMVQE
LRKEIETQKQMYEEQIKNLEKENYDVWAKVVRLNEELEKEKKKSAALEISLRNMERSREDVEKRNKALEE
EVKEFVKSMKEPKTEA


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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