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Report for CCDS33685.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33685.1 Public Homo sapiens 3 LRRN1 24 110 108 CCDS HistoryNCBI Gene:57633Re-query CCDS DB by CCDS ID:33685.1Re-query CCDS DB by GeneID:57633See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33685.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000319331.4 ENSP00000314901.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000319331.4Link to Ensembl Protein Viewer:ENSP00000314901.3Re-query CCDS DB by Nucleotide ID:ENST00000319331Re-query CCDS DB by Protein ID:ENSP00000314901
Original member Current member NCBI NM_001324188.2 NP_001311117.1 Accepted alive Link to Nucleotide Sequence:NM_001324188.2Link to Protein Sequence:NP_001311117.1Re-query CCDS DB by Nucleotide ID:NM_001324188Re-query CCDS DB by Protein ID:NP_001311117Link to BLAST:NP_001311117.1
Original member Current member NCBI NM_001324189.2 NP_001311118.1 Accepted alive Link to Nucleotide Sequence:NM_001324189.2Link to Protein Sequence:NP_001311118.1Re-query CCDS DB by Nucleotide ID:NM_001324189Re-query CCDS DB by Protein ID:NP_001311118Link to BLAST:NP_001311118.1
Original member Current member NCBI NM_020873.7 NP_065924.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020873.7Link to Protein Sequence:NP_065924.3Re-query CCDS DB by Nucleotide ID:NM_020873Re-query CCDS DB by Protein ID:NP_065924Link to BLAST:NP_065924.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001311117.1 716 Q6UXK5 716 100% 0 0
NP_001311118.1 716 Q6UXK5 716 100% 0 0
NP_065924.3 716 Q6UXK5 716 100% 0 0

Chromosomal Locations for CCDS 33685.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 3844642 3846792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2151 nt):
ATGGCTAGGATGAGCTTTGTTATAGCAGCTTGCCAATTGGTGCTGGGCCTACTAATGACTTCATTAACCG
AGTCTTCCATACAGAATAGTGAGTGTCCACAACTTTGCGTATGTGAAATTCGTCCCTGGTTTACCCCACA
GTCAACTTACAGAGAAGCCACCACTGTTGATTGCAATGACCTCCGCTTAACAAGGATTCCCAGTAACCTC
TCTAGTGACACACAAGTGCTTCTCTTACAGAGCAATAACATCGCAAAGACTGTGGATGAGCTGCAGCAGC
TTTTCAACTTGACTGAACTAGATTTCTCCCAAAACAACTTTACTAACATTAAGGAGGTCGGGCTGGCAAA
CCTAACCCAGCTCACAACGCTGCATTTGGAGGAAAATCAGATTACCGAGATGACTGATTACTGTCTACAA
GACCTCAGCAACCTTCAAGAACTCTACATCAACCACAACCAAATTAGCACTATTTCTGCTCATGCTTTTG
CAGGCTTAAAAAATCTATTAAGGCTCCACCTGAACTCCAACAAATTGAAAGTTATTGATAGTCGCTGGTT
TGATTCTACACCCAACCTGGAAATTCTCATGATCGGAGAAAACCCTGTGATTGGAATTCTGGATATGAAC
TTCAAACCCCTCGCAAATTTGAGAAGCTTAGTTTTGGCAGGAATGTATCTCACTGATATTCCTGGAAATG
CTTTGGTGGGTCTGGATAGCCTTGAGAGCCTGTCTTTTTATGATAACAAACTGGTTAAAGTCCCTCAACT
TGCCCTGCAAAAAGTTCCAAATTTGAAATTCTTAGACCTCAACAAAAACCCCATTCACAAAATCCAAGAA
GGGGACTTCAAAAATATGCTTCGGTTAAAAGAACTGGGAATCAACAATATGGGCGAGCTCGTTTCTGTCG
ACCGCTATGCCCTGGATAACTTGCCTGAACTCACAAAGCTGGAAGCCACCAATAACCCTAAACTCTCTTA
CATCCACCGCTTGGCTTTCCGAAGTGTCCCTGCTCTGGAAAGCTTGATGCTGAACAACAATGCCTTGAAT
GCCATTTACCAAAAGACAGTCGAATCCCTCCCCAATCTGCGTGAGATCAGTATCCATAGCAATCCCCTCA
GGTGTGACTGTGTGATCCACTGGATTAACTCCAACAAAACCAACATCCGCTTCATGGAGCCCCTGTCCAT
GTTCTGTGCCATGCCGCCCGAATATAAAGGGCACCAGGTGAAGGAAGTTTTAATCCAGGATTCGAGTGAA
CAGTGCCTCCCAATGATATCTCACGACAGCTTCCCAAATCGTTTAAACGTGGATATCGGCACGACGGTTT
TCCTAGACTGTCGAGCCATGGCTGAGCCAGAACCTGAAATTTACTGGGTCACTCCCATTGGAAATAAGAT
AACTGTGGAAACCCTTTCAGATAAATACAAGCTAAGTAGCGAAGGTACCTTGGAAATATCTAACATACAA
ATTGAAGACTCAGGAAGATACACATGTGTTGCCCAGAATGTCCAAGGGGCAGACACTCGGGTGGCAACAA
TTAAGGTTAATGGGACCCTTCTGGATGGTACCCAGGTGCTAAAAATATACGTCAAGCAGACAGAATCCCA
TTCCATCTTAGTGTCCTGGAAAGTTAATTCCAATGTCATGACGTCAAACTTAAAATGGTCGTCTGCCACC
ATGAAGATTGATAACCCTCACATAACATATACTGCCAGGGTCCCAGTCGATGTCCATGAATACAACCTAA
CGCATCTGCAGCCTTCCACAGATTATGAAGTGTGTCTCACAGTGTCCAATATTCATCAGCAGACTCAAAA
GTCATGCGTAAATGTCACAACCAAAAATGCCGCCTTCGCAGTGGACATCTCTGATCAAGAAACCAGTACA
GCCCTTGCTGCAGTAATGGGGTCTATGTTTGCCGTCATTAGCCTTGCGTCCATTGCTGTGTACTTTGCCA
AAAGATTTAAGAGAAAAAACTACCACCACTCATTAAAAAAGTATATGCAAAAAACCTCTTCAATCCCACT
AAATGAGCTGTACCCACCACTCATTAACCTCTGGGAAGGTGACAGCGAGAAAGACAAAGATGGTTCTGCA
GACACCAAGCCAACCCAGGTCGACACATCCAGAAGCTATTACATGTGGTAA

Translation (716 aa):
MARMSFVIAACQLVLGLLMTSLTESSIQNSECPQLCVCEIRPWFTPQSTYREATTVDCNDLRLTRIPSNL
SSDTQVLLLQSNNIAKTVDELQQLFNLTELDFSQNNFTNIKEVGLANLTQLTTLHLEENQITEMTDYCLQ
DLSNLQELYINHNQISTISAHAFAGLKNLLRLHLNSNKLKVIDSRWFDSTPNLEILMIGENPVIGILDMN
FKPLANLRSLVLAGMYLTDIPGNALVGLDSLESLSFYDNKLVKVPQLALQKVPNLKFLDLNKNPIHKIQE
GDFKNMLRLKELGINNMGELVSVDRYALDNLPELTKLEATNNPKLSYIHRLAFRSVPALESLMLNNNALN
AIYQKTVESLPNLREISIHSNPLRCDCVIHWINSNKTNIRFMEPLSMFCAMPPEYKGHQVKEVLIQDSSE
QCLPMISHDSFPNRLNVDIGTTVFLDCRAMAEPEPEIYWVTPIGNKITVETLSDKYKLSSEGTLEISNIQ
IEDSGRYTCVAQNVQGADTRVATIKVNGTLLDGTQVLKIYVKQTESHSILVSWKVNSNVMTSNLKWSSAT
MKIDNPHITYTARVPVDVHEYNLTHLQPSTDYEVCLTVSNIHQQTQKSCVNVTTKNAAFAVDISDQETST
ALAAVMGSMFAVISLASIAVYFAKRFKRKNYHHSLKKYMQKTSSIPLNELYPPLINLWEGDSEKDKDGSA
DTKPTQVDTSRSYYMW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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