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Report for CCDS35551.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35551.1 Public Mus musculus 1 Uxs1 23 108 98 CCDS HistoryNCBI Gene:67883Re-query CCDS DB by CCDS ID:35551.1Re-query CCDS DB by GeneID:67883See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35551.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000126008.7 ENSMUSP00000119939.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000126008.7Link to Ensembl Protein Viewer:ENSMUSP00000119939.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000126008Re-query CCDS DB by Protein ID:ENSMUSP00000119939
Original member Current member NCBI NM_026430.4 NP_080706.1 Accepted alive Link to Nucleotide Sequence:NM_026430.4Link to Protein Sequence:NP_080706.1Re-query CCDS DB by Nucleotide ID:NM_026430Re-query CCDS DB by Protein ID:NP_080706Link to BLAST:NP_080706.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080706.1 420 Q91XL3 420 100% 0 0

Chromosomal Locations for CCDS 35551.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 43750231 43750362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43753717 43753820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43755699 43755756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43756972 43757032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43760521 43760564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43764890 43765009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43771681 43771802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43774817 43774876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43780065 43780169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43790464 43790644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43797245 43797305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43805353 43805396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43805626 43805674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43807350 43807377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43827615 43827708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGGTGAGCAAGGGGCTGTTGCGCCTTGTCTCTTCAGTCAACCGCAGGAGGATGAAGCTTCTGCTCGGCA
TCGCGCTGTTCGCCTACGCCGCCTCTGTTTGGGGCAACTTTGTTAACATGAGGTCTATCCAGGAAAATGG
AGAACTAAAGATCGAAAGCAAGATTGAAGAGATTGTTGAACCATTAAGAGAGAAAATCAGAGATTTGGAA
AAAAGTTTTACCCAGAAATACCCGCCTGTAAAGTTTTTATCAGAAAAGGACCGGAAAAGGATTTTGATCA
CTGGAGGTGCAGGCTTTGTGGGCTCCCATCTAACTGACAAACTCATGATGGATGGCCATGAGGTGACCGT
GGTGGACAACTTCTTCACAGGCAGGAAGAGAAATGTGGAACACTGGATTGGCCATGAGAACTTCGAGCTG
ATTAACCATGATGTGGTCGAGCCGCTCTACATAGAAGTTGACCAGATATATCATCTGGCATCTCCAGCCT
CCCCACCAAACTACATGTACAACCCCATCAAGACACTGAAGACTAATACAATTGGAACACTAAACATGTT
GGGATTGGCAAAGCGCGTGGGTGCCCGTCTGCTCTTGGCCTCCACTTCCGAGGTATATGGAGATCCTGAG
GTCCACCCTCAAAGTGAGGACTACTGGGGCCATGTGAATCCCATAGGACCCCGAGCCTGCTATGATGAGG
GCAAACGTGTTGCAGAGACCATGTGCTATGCCTACATGAAGCAGGAAGGTGTGGAAGTACGGGTGGCAAG
GATCTTCAACACCTTTGGGCCGAGAATGCACATGAATGATGGGCGGGTGGTCAGCAACTTCATCTTACAA
GCACTACAAGGGGAGCCACTCACAGTCTATGGCTCTGGGTCTCAGACACGGGCATTCCAGTACGTAAGTG
ATCTGGTGAATGGCCTGGTAGCACTGATGAACAGCAATGTCAGCAGTCCTGTCAACTTGGGAAATCCAGA
AGAACACACAATCCTGGAATTTGCTCAGTTAATTAAAAACCTTGTTGGTAGTGGAAGTGAAATTCAGTTT
CTCTCTGAAGCCCAGGATGACCCACAGAAAAGAAAACCAGACATCAAAAAAGCAAAACTGATGCTGGGGT
GGGAACCTGTGGTTCCATTGGAGGAAGGATTGAACAAAGCCATCCACTACTTCCGGAAGGAATTAGAGTA
CCAGGCTAATAACCAGTACATCCCCAAACCCAAGCCCGCCAGAGTGAAGAAGGGCCGGACGCGCCACAGC
TGA

Translation (420 aa):
MVSKGLLRLVSSVNRRRMKLLLGIALFAYAASVWGNFVNMRSIQENGELKIESKIEEIVEPLREKIRDLE
KSFTQKYPPVKFLSEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFEL
INHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPE
VHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQ
ALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQF
LSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQYIPKPKPARVKKGRTRHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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