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Report for CCDS35688.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35688.1 Public Mus musculus 1 Dsel 23 108 98 CCDS HistoryNCBI Gene:319901Re-query CCDS DB by CCDS ID:35688.1Re-query CCDS DB by GeneID:319901See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35688.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035462.6 ENSMUSP00000043570.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035462.6Link to Ensembl Protein Viewer:ENSMUSP00000043570.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000035462Re-query CCDS DB by Protein ID:ENSMUSP00000043570
Original member NCBI NM_001081316.1 NP_001074785.1 Updated not alive Link to Nucleotide Sequence:NM_001081316.1Link to Protein Sequence:NP_001074785.1Re-query CCDS DB by Nucleotide ID:NM_001081316Re-query CCDS DB by Protein ID:NP_001074785
Current member NCBI NM_001081316.2 NP_001074785.1 Accepted alive Link to Nucleotide Sequence:NM_001081316.2Link to Protein Sequence:NP_001074785.1Re-query CCDS DB by Nucleotide ID:NM_001081316Re-query CCDS DB by Protein ID:NP_001074785Link to BLAST:NP_001074785.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074785.1 1207 Q0VBN2 1207 100% 0 0

Chromosomal Locations for CCDS 35688.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 111859180 111862803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3624 nt):
ATGGCGTTTATGTTTACAGAACATTTACTATTTTTAACATTGATGATGTGTAGTTTTTCTACTTGTGAAG
AATCTGTGAGCAATTATTCTGAATGGGCAGTTTTCACAGACGATATACAATGGCTTAAGTCACAGAAAAT
ACAAGATTTCAAACTCAACCGAAGACTTCATCCAAATTTATATTTTGATGCTGGAGATATACAAACATTG
AAACAAAAGTCTCGTACAAGCCATTTGCATATTTTTAGAGCTATCAAAAGTGCAGTGACAATTATGCTGT
CCAATCCATCATACTACCTACCTCCACCCAAGCATGCTGAGTTTGCTGCCAAGTGGAATGAAATTTATGG
TAATAATCTTCCTCCTTTAGCATTGTATTGTTTATTATGCCCAGAAGACAAGGTTGCCTTTGAATTTGTT
ATGGAATACATGGATCGGATGGTTAGCTACAAAGACTGGCTAGTTGAGAATGCACCAGGGGATGAGGTTC
CAGTTGGCCATTCTTTAACAGGTTTTGCCACTGCCTTTGACTTTTTATATAATCTATTAGGTAATCAGCG
TAAACAAAAATACCTAGAAAAAATTTGGATTGTTACTGAGGAAATGTATGAATATTCCAAGATTCGATCA
TGGGGCAAACAACTTCTTCATAACCATCAAGCTACAAATATGATAGCTTTACTCATAGGGGCCTTGGTTA
CTGGAGTAGATAAAGGATCTAAAGCAAACATATGGAAACAAGTTGTTGTTGATGTGATGGAAAAGACTAT
GTTTCTCTTGAAGCATATTGTAGATGGCTCATTGGATGAAGGTGTGGCCTATGGAAGCTATACCTCAAAA
TCAGTTACACAGTATGTTTTTTTGGCACAACGCCATTTTAACATCAACAACTTTGATAATAACTGGCTAA
AAATGCATTTTTGGTTTTATTATGCTACACTTTTGCCAGGCTATCAAAGAACTGTAGGCATAGCAGATTC
CAATTATAATTGGTTTTATGGTCCAGAGAGCCAGCTAGTTTTCTTGGATAAGTTCATTTTACAGAATGGA
GCTGGAAATTGGTTAGCTCAGCAAATTAGAAAGCATCGACCTAAGGATGGACCAATGGTTCCTTCCACTG
CTCAGCGGTGGAGTACTCTTCATACTGAATACATCTGGTATGATCCAACACTCACCCCACAGCCTCCTGT
TGATTTTGGCACTGCAAAAATGCACACATTTCCTAACTGGGGTGTCGTGACTTATGGGGGTGGGCTGCCA
AACACCCAGACCAATACCTTTGTGTCTTTTAAATCTGGGAAACTGGGAGGACGAGCTGTGTATGACATAG
TTCACTTTCAGCCATATTCCTGGATTGATGGATGGAGAAGCTTTAACCCAGGACATGAACATCCAGATCA
AAATTCATTTACTTTCGCTCCTAATGGGCAGGTATTCGTTTCTGAGGCTCTTTATGGACCAAAATTGAGC
CACCTTAACAACGTATTGGTGTTTGCCCCATCACCATCAAGTCAATGTAATCAGCCCTGGGAAGGTCAAC
TGGGAGAATGTGCACAGTGGCTCAAGTGGACTGGGGAAGAGGTTGGTGATGCAGCTGGGGAAGTTATTAC
TGCTGCTCAACATGGTGATAGGATGTTTGTGAGTGGGGAAGCAGTGTCTGCTTATTCTTCTGCCATGAGA
CTGAAAAGTGTCTATCGTGCTTTACTTCTTTTAAATTCACAAACTCTGCTTGTTGTCGATCATATTGAAA
GGCAAGAAACTTCCCCAATAAATTCTGTCAGTGCCTTCTTTCATAATTTGGATATTGATTTTAAATACAT
CCCATACAAGTTTATGAATAGATATAATGGTGCCATGATGGATGTGTGGGATGCACACTATAAAATGTTT
TGGTTTGATCACCATGGCAACAGTCCTGTGGCTAATATACAGGAAGCAGAACAGGCTGCTGAATTTAAGA
AACGGTGGACACAGTTTGTTAATGTTACATTTCATATGGAATCCACAATCACAAGAATTGCTTATGTATT
TTATGGGCCATATGTCAATGTTTCCAGCTGCAGATTTATTGATAGTTCCAGTTCTGGACTTCAGATTTCT
TTACATGTCAACAGTACTGAACATAGTGTGTCTGTTGTAACTGACTATCAAAACCTTAAAAGCAGATTCA
GTTACCTGGGATTTGGTGGTTTTGCCAGTGTGGCTAATCAAGGACAGATAACCAGATTTGGTTTGGGTAC
TCAAGAAATAGTAAACCCTGTAAGACATGATAAAGTTAATTTCCCCTTTGGGTTTAAATTTAATATAGCA
GTTGGATTCATTTTGTGTATTAGTTTGGTTATTTTAACTTTTCAATGGCGGTTTTACCTTTCCTTTAGAA
AGCTAATGCGCTGTGTATTAATACTTGTTATTGCCTTGTGGTTTATTGAGCTTCTGGATGTATGGAGTAC
ATGCACTCAGCCCATCTGTGCAAAATGGACAAGGACTGAAGCTAAGGCAAATGAGAAGGTCATGATTTCT
GAAGGGCATCATGTGGATCTTCCTAATGTTATTATTACCTCACTCCCTGGTTCAGGAGCTGAAATTCTCA
AACAGCTTTTTTTCAACAGCAGTGATTTTCTCTACATCAGAATTCCTACAGCCTACATGGATATCCCTGA
AACTGAATTTGAAATTGACTCATTTGTAGATGCTTGTGAGTGGAAAGTATCAGATATCCGCAGTGGGCAC
TTTCATCTTCTTCGAGGGTGGCTGCAGTCTTTGGTCCAGGATACAAAACTTCACTTGCAAAACATCCATC
TACATGAAACCAGTAGGAGTAAACTGGCCCAATATTTTACAACTAATAAGGACAAAAAGCGAAAATTAAA
AAGAAGGGAGTCTTTGCAAGATCAAAGAAGTAGAATAAAAGGACCATTTGATAGAGATGCTGAATATATT
AGGGCTTTAAGAAGACACCTTGTTTATTACCCAAGTGCACGTCCTGTGCTCAGCTTAAGTAGTGGTAGCT
GGACATTGAAGCTTCATTTTTTTCAGGAAGTTTTAGGAACTTCAATGCGGGCATTGTACATAGTAAGAGA
CCCTCGAGCTTGGATCTATTCAGTGCTATATGGTAGTAAACCAAGTCTTTATTCTTTGAAGAATGTACCA
GAGCACTTAGCAAAATTGTTTAAAATAGAGGAAGGTAAAAGCAAATGTAATTCGAATTCTGGCTATGCTT
TTGAGTATGAATCACTGAAGAAAGAATTAGAAATATCCCAATCAAATGCTATCTCCTTATTATCTCATTT
GTGGGTAGCAAACACTGCAGCAGCCTTGAGAATAAATACAGATTTGCTGCCTACCAATTACCATCTGGTC
AAGTTTGAAGATATTGTTCATTTTCCTCAGAAGACTACTGAAAGGATTTTTGCTTTCCTTGGCATTCCTT
TGTCTCCTGCTAGTTTAAACCAAATGCTATTTGCCACTTCCACAAACCTTTTTTATCTTCCATATGAGGG
GGAAATATCACCATCTAATACTAATATTTGGAAAACAAACTTGCCTAGAGATGAAATTAAACTAATTGAA
AACATTTGCTGGACACTGATGGATCATCTAGGATATCCAAAGTTTATGGACTAA

Translation (1207 aa):
MAFMFTEHLLFLTLMMCSFSTCEESVSNYSEWAVFTDDIQWLKSQKIQDFKLNRRLHPNLYFDAGDIQTL
KQKSRTSHLHIFRAIKSAVTIMLSNPSYYLPPPKHAEFAAKWNEIYGNNLPPLALYCLLCPEDKVAFEFV
MEYMDRMVSYKDWLVENAPGDEVPVGHSLTGFATAFDFLYNLLGNQRKQKYLEKIWIVTEEMYEYSKIRS
WGKQLLHNHQATNMIALLIGALVTGVDKGSKANIWKQVVVDVMEKTMFLLKHIVDGSLDEGVAYGSYTSK
SVTQYVFLAQRHFNINNFDNNWLKMHFWFYYATLLPGYQRTVGIADSNYNWFYGPESQLVFLDKFILQNG
AGNWLAQQIRKHRPKDGPMVPSTAQRWSTLHTEYIWYDPTLTPQPPVDFGTAKMHTFPNWGVVTYGGGLP
NTQTNTFVSFKSGKLGGRAVYDIVHFQPYSWIDGWRSFNPGHEHPDQNSFTFAPNGQVFVSEALYGPKLS
HLNNVLVFAPSPSSQCNQPWEGQLGECAQWLKWTGEEVGDAAGEVITAAQHGDRMFVSGEAVSAYSSAMR
LKSVYRALLLLNSQTLLVVDHIERQETSPINSVSAFFHNLDIDFKYIPYKFMNRYNGAMMDVWDAHYKMF
WFDHHGNSPVANIQEAEQAAEFKKRWTQFVNVTFHMESTITRIAYVFYGPYVNVSSCRFIDSSSSGLQIS
LHVNSTEHSVSVVTDYQNLKSRFSYLGFGGFASVANQGQITRFGLGTQEIVNPVRHDKVNFPFGFKFNIA
VGFILCISLVILTFQWRFYLSFRKLMRCVLILVIALWFIELLDVWSTCTQPICAKWTRTEAKANEKVMIS
EGHHVDLPNVIITSLPGSGAEILKQLFFNSSDFLYIRIPTAYMDIPETEFEIDSFVDACEWKVSDIRSGH
FHLLRGWLQSLVQDTKLHLQNIHLHETSRSKLAQYFTTNKDKKRKLKRRESLQDQRSRIKGPFDRDAEYI
RALRRHLVYYPSARPVLSLSSGSWTLKLHFFQEVLGTSMRALYIVRDPRAWIYSVLYGSKPSLYSLKNVP
EHLAKLFKIEEGKSKCNSNSGYAFEYESLKKELEISQSNAISLLSHLWVANTAAALRINTDLLPTNYHLV
KFEDIVHFPQKTTERIFAFLGIPLSPASLNQMLFATSTNLFYLPYEGEISPSNTNIWKTNLPRDEIKLIE
NICWTLMDHLGYPKFMD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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