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Report for CCDS35783.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35783.1 Public Mus musculus 1 Kcnj9 23 108 98 CCDS HistoryNCBI Gene:16524Re-query CCDS DB by CCDS ID:35783.1Re-query CCDS DB by GeneID:16524See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35783.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062387.7 ENSMUSP00000060110.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062387.7Link to Ensembl Protein Viewer:ENSMUSP00000060110.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000062387Re-query CCDS DB by Protein ID:ENSMUSP00000060110
Original member Current member EBI ENSMUST00000194204.1 ENSMUSP00000141633.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000194204.1Link to Ensembl Protein Viewer:ENSMUSP00000141633.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000194204Re-query CCDS DB by Protein ID:ENSMUSP00000141633
Original member Current member NCBI NM_001360808.1 NP_001347737.1 Accepted alive Link to Nucleotide Sequence:NM_001360808.1Link to Protein Sequence:NP_001347737.1Re-query CCDS DB by Nucleotide ID:NM_001360808Re-query CCDS DB by Protein ID:NP_001347737Link to BLAST:NP_001347737.1
Original member Current member NCBI NM_008429.3 NP_032455.2 Accepted alive Link to Nucleotide Sequence:NM_008429.3Link to Protein Sequence:NP_032455.2Re-query CCDS DB by Nucleotide ID:NM_008429Re-query CCDS DB by Protein ID:NP_032455Link to BLAST:NP_032455.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347737.1 393 P48543 393 100% 0 0
NP_032455.2 393 P48543 393 100% 0 0

Chromosomal Locations for CCDS 35783.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 172322863 172323194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172325706 172326555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1182 nt):
ATGGCGCAGGAGAACGCCGCTTTCTCTCCCGGGTCGGAGGAGCCGCCACGCCGCCGCGGTCGCCAGCGCT
ACGTGGAGAAGGACGGTCGCTGTAACGTGCAGCAGGGCAACGTCCGCGAGACCTACCGCTACCTGACCGA
CCTGTTCACCACGCTGGTGGACCTGCAGTGGCGCCTCAGCCTGCTCTTCTTCGTGCTCGCCTACGCGCTC
ACTTGGCTCTTCTTCGGCGCCATCTGGTGGCTCATCGCCTACGGCCGCGGCGACCTGGAACACCTGGAGG
ACACCGCGTGGACCCCGTGCGTCAACAACCTCAACGGCTTCGTGGCCGCCTTCCTCTTCTCCATCGAGAC
GGAGACCACCATCGGCTATGGGCACCGGGTCATCACCGACCAGTGTCCCGAGGGCATCGTGCTGCTGCTG
CTGCAGGCTATCCTGGGCTCCATGGTGAACGCTTTCATGGTGGGCTGCATGTTCGTCAAGATCTCGCAGC
CCAACAAGCGCGCCGCCACTCTCGTCTTCTCCTCGCACGCCGTGGTGTCTCTGCGCGACGGGCGCCTCTG
TCTCATGTTTCGCGTGGGCGACCTGCGATCCTCGCACATCGTCGAGGCCTCCATCCGCGCCAAGCTCATC
CGCTCCCGTCAGACGCTCGAGGGCGAGTTCATCCCTTTGCACCAGACCGACCTCAGCGTGGGCTTTGACA
CGGGGGACGACCGCCTCTTTCTCGTCTCACCTCTCGTCATCAGCCACGAAATCGATGCCGCCAGCCCCTT
CTGGGAGGCATCGCGCCGCGCCCTCGAGAGGGACGACTTCGAGATCGTAGTCATTCTCGAGGGCATGGTG
GAGGCCACGGGAATGACGTGCCAAGCTCGAAGCTCGTACCTGGTGGATGAAGTGTTGTGGGGCCACCGGT
TCACATCGGTGCTCACCCTGGAGGATGGTTTCTATGAGGTGGACTACGCCAGCTTCCACGAAACCTTTGA
GGTGCCCACACCCTCGTGCAGTGCTCGGGAACTGGCAGAAGCCGCGGCCCGCCTCGATGCCCATCTCTAC
TGGTCCATCCCCAGCAGGCTGGATGAGAAGGTGGAGGAAGAAGGGGCTGGGGAGGGGGCAGGTGCGGGAG
ATGGAGCTGACAAGGAGCACAATGGCTGCCTGCCACCCCCAGAGAGTGAGTCCAAGGTGTGA

Translation (393 aa):
MAQENAAFSPGSEEPPRRRGRQRYVEKDGRCNVQQGNVRETYRYLTDLFTTLVDLQWRLSLLFFVLAYAL
TWLFFGAIWWLIAYGRGDLEHLEDTAWTPCVNNLNGFVAAFLFSIETETTIGYGHRVITDQCPEGIVLLL
LQAILGSMVNAFMVGCMFVKISQPNKRAATLVFSSHAVVSLRDGRLCLMFRVGDLRSSHIVEASIRAKLI
RSRQTLEGEFIPLHQTDLSVGFDTGDDRLFLVSPLVISHEIDAASPFWEASRRALERDDFEIVVILEGMV
EATGMTCQARSSYLVDEVLWGHRFTSVLTLEDGFYEVDYASFHETFEVPTPSCSARELAEAAARLDAHLY
WSIPSRLDEKVEEEGAGEGAGAGDGADKEHNGCLPPPESESKV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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