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Report for CCDS35837.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35837.2 Public Mus musculus 10 Stxbp5 23 108 98 CCDS HistoryNCBI Gene:78808Re-query CCDS DB by CCDS ID:35837.2Re-query CCDS DB by GeneID:78808See the combined annotation on chromosome 10 in Sequence Viewer

Public Note for CCDS 35837.1
The coding region has been updated to represent an alternate exon or splice site that is more supported by the available transcript and protein data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 35837.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000141722.7 ENSMUSP00000123253.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000141722.7Link to Ensembl Protein Viewer:ENSMUSP00000123253.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000141722Re-query CCDS DB by Protein ID:ENSMUSP00000123253
Original member NCBI NM_001081344.2 NP_001074813.2 Updated not alive Link to Nucleotide Sequence:NM_001081344.2Link to Protein Sequence:NP_001074813.2Re-query CCDS DB by Nucleotide ID:NM_001081344Re-query CCDS DB by Protein ID:NP_001074813
Current member NCBI NM_001081344.3 NP_001074813.2 Accepted alive Link to Nucleotide Sequence:NM_001081344.3Link to Protein Sequence:NP_001074813.2Re-query CCDS DB by Nucleotide ID:NM_001081344Re-query CCDS DB by Protein ID:NP_001074813Link to BLAST:NP_001074813.2

Chromosomal Locations for CCDS 35837.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 9760913 9760954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 9762745 9762965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 9767158 9767269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 9768830 9768995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 9769341 9769710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 9770450 9770689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 9778021 9778071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 9789363 9789428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 9798122 9798273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 9799943 9800068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 9808420 9808598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 9809029 9809249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 9811668 9811708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 9811965 9812032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 9812260 9812407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 9816251 9816323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 9817306 9817460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 9825370 9825448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 9835834 9835957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 9838077 9838160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 9841871 9841934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 9843227 9843361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 9865013 9865113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 9866613 9866694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 9899157 9899254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 9900531 9900683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3351 nt):
ATGAGGAAATTCAACATCAGGAAGGTGCTGGACGGCCTGACCGCAGGCTCGTCCTCGGCCTCGCAACAGC
AGCAACAGCAGCAGCACCCGCCTGGGAACCGGGAGCCGGAGATCCAGGAGACGCTCCAGTCCGAACACTT
CCAACTCTGCAAGACTGTTCGCCATGGATTCCCCTATCAGCCCTCAGCCCTGGCCTTTGATCCCGTTCAG
AAGATCCTGGCGGTAGGAACTCAGACTGGTGCTTTAAGGCTCTTTGGTCGTCCAGGAGTGGAATGTTATT
GCCAGCACGACAGCGGAGCAGCAGTGATCCAACTCCAGTTCCTGATTAATGAGGGAGCCCTTGTGAGTGC
CTTGGCTGATGACACCCTACACTTATGGAATTTACGTCAAAAAAGGCCTGCCGTACTACATTCACTTAAA
TTTTGCAGAGAAAGGGTTACATTTTGCCATCTGCCTTTCCAGAGTAAGTGGCTCTATGTGGGCACTGAGC
GAGGAAACATACACATTGTTAATGTGGAGTCCTTCACACTCTCAGGCTATGTCATTATGTGGAATAAAGC
CATCGAACTGTCATCTAAAGCTCACCCAGGACCAGTTGTGCATATAAGTGACAATCCCATGGACGAGGGG
AAGCTTTTGATTGGCTTCGAATCTGGAACAGTAGTCTTATGGGACCTCAAGTCAAAGAAGGCTGACTACA
GATACACATACGACGAGGCTATTCACTCTGTGGCTTGGCATCATGAAGGAAAACAATTTATTTGCAGTCA
TTCTGACGGTACTTTGACCATATGGAATGTGAGATCCCCTGCTAAACCTGTACAGACCATCACTCCTCAC
GGAAAACAGTTGAAGGATGGGAAGAAGCCAGAGCCATGCAAGCCTATCCTGAAGGTGGAGTTGAAGACAA
CAAGATCCGGGGAACCTTTTATTATTTTGTCAGGAGGCTTATCCTATGATACCGTGGGAAGAAGACCCTG
CTTAACAGTGATGCACGGGAAAAGCACAGCAGTGCTGGAAATGGACTATTCAATCGTTGACTTTCTCACA
CTCTGTGAAACGCCATATCCAAACGATTTTCAGGAACCATATGCTGTGGTTGTTCTCCTGGAAAAGGACT
TAGTGCTGATAGACCTTGCACAAAATGGATACCCTATATTTGAGAATCCCTACCCTTTGAGTATACACGA
GTCCCCTGTTACATGTTGTGAATATTTTGCTGATTGTCCTGTGGATCTTATTCCTGCACTTTACTCTGTT
GGAGCTAGACAGAAGCGTCAAGGTTACAGCAAAAAGGAATGGCCCATCAATGGTGGTAATTGGGGCTTGG
GTGCTCAAAGTTACCCAGAAATAATTATTACAGGGCATGCTGATGGCTCGGTGAAATTCTGGGACGCTTC
TGCAATAACTCTACAAGTACTATATAAATTAAAAACATCTAAAGTATTTGAGAAGTCAAGAAACAAAGAT
GACAGACAGAACACAGACATTGTAGATGAAGATCCATATGCCATTCAGATCATCTCCTGGTGCCCAGAGA
GCAGGATGCTGTGCATAGCTGGAGTGTCAGCCCATGTCATCATCTATAGATTCAGCAAGCAGGAAGTGCT
TACCGAAGTCATCCCGATGCTTGAAGTTCGACTGTTATATGAAATAAATGATGTGGATACTCCAGAGGGT
GAGCAGCCCCCGCCTCTGTCCACCCCCGTGGGCAGCTCCAACCCTCAGCCCATTCCTCCTCAGTCTCATC
CGTCTACCAGCAGCAGCTCATCTGACGGGCTTCGTGATAACGTTCCTTGCTTAAAAGTTAAAAACTCCCC
ACTTAAGCAGTCTCCAGGCTATCAGACAGAGCTGGTCATTCAGTTGGTGTGGGTGGGTGGAGAACCCCCG
CAGCAGATCACCAGCCTGGCACTCAACTCTTCCTATGGACTGGTGGTTTTCGGCAACTGTAACGGCATCG
CAATGGTTGACTACCTCCAGAAAGCAGTACTGCTCAACCTCAGCACCATCGAACTTTACGGCTCAAATGA
TCCTTATCGGAGAGAACCTCGCTCGCCCCGAAAATCCCGACAGCCTTCAGGAGCGGGCCTGTGTGATATC
ACCGAAGGGACTGTCGTCCCGGAGGATCGCTGCAAATCTCCCACTTCCGCAAAGATGTCAAGGAAATTAA
GCTTGCCAACTGACCTAAAGCCTGATTTAGATGTAAAAGACAATTCCTTCAGCAGATCGCGGAGTTCAAG
TGTAACCAGCATTGACAAAGAGTCCCGGGAAACCATCTCTGCTCTTCATTTCTGTGAGACTTTGACGCGG
AAGGCCGACTCTTCCCCCTCCCCCTGCCTGTGGGTCGGAACTACAGTGGGAACTGCGTTTGTCATCACGC
TGAATCTCCCCCCGGGGCCTGAGCAGAGACTCCTTCAGCCAGTGATTGTGTCTCCAAGCGGTACTATATT
GAGGTTAAAAGGTGCAATCTTGAGGATGGCATTTCTGGATGCCACGGGCTGCTTAATGTCTCCTGCATAC
GAACCCTGGAAAGAACACAACGTTGCTGAAGAAAAAGACGAAAAGGAGAAATTGAAAAAGCGGCGACCTG
TCTCAGTGTCCCCCTCCTCTTCTCAGGAAATTAGTGAGAACCAGTACGCAGTGATATGCTCTGAAAAGCA
AGCAAAGGTCATGTCACTGCCAACCCAGAGCTGTGCATACAAGCAGAACATCACCGAGACGTCCTTCGTG
CTCCGCGGAGACATTGTCGCACTGAGTAACAGTGTCTGCCTCGCCTGCTTCTGTGCCAATGGCCATATCA
TGACTTTCAGTTTGCCAAGCTTGAGGCCTCTCCTGGATGTCTACTACCTGCCCCTTACCAACATGCGGAT
AGCCAGGACATTCTGCTTCGCCAACAACGGACAAGCCTTATACCTTGTTTCACCTACAGAAATCCAGAGA
CTCACCTACAGTCAGGAGACATGTGAAAATCTTCAGGAGATGCTCGGTGAACTCTTCACGCCTGTAGAGA
CACCAGAAGCACCAAACAGAGGCTTCTTCAAAGGCTTATTTGGAGGCGGTGCACAATCTCTCGATAGAGA
AGAACTATTTGGAGAGTCGTCCTCGGGAAAGGCCTCCAGGAGCCTCGCACAACACATCCCGGGCCCTGGT
GGGATCGAAGGTGTGAAAGGAGCCGCGTCAGGAGTGGTGGGTGAACTTGCCCGAGCCAGGCTGGCCCTCG
ACGAAAGAGGACAGAAGCTCAGTGACTTGGAAGAAAGGACGGCAGCCATGATGTCCAGCGCAGACTCCTT
CTCCAAACATGCTCATGAGATGATGCTGAAATACAAAGATAAGAAGTGGTACCAGTTCTGA

Translation (1116 aa):
MRKFNIRKVLDGLTAGSSSASQQQQQQQHPPGNREPEIQETLQSEHFQLCKTVRHGFPYQPSALAFDPVQ
KILAVGTQTGALRLFGRPGVECYCQHDSGAAVIQLQFLINEGALVSALADDTLHLWNLRQKRPAVLHSLK
FCRERVTFCHLPFQSKWLYVGTERGNIHIVNVESFTLSGYVIMWNKAIELSSKAHPGPVVHISDNPMDEG
KLLIGFESGTVVLWDLKSKKADYRYTYDEAIHSVAWHHEGKQFICSHSDGTLTIWNVRSPAKPVQTITPH
GKQLKDGKKPEPCKPILKVELKTTRSGEPFIILSGGLSYDTVGRRPCLTVMHGKSTAVLEMDYSIVDFLT
LCETPYPNDFQEPYAVVVLLEKDLVLIDLAQNGYPIFENPYPLSIHESPVTCCEYFADCPVDLIPALYSV
GARQKRQGYSKKEWPINGGNWGLGAQSYPEIIITGHADGSVKFWDASAITLQVLYKLKTSKVFEKSRNKD
DRQNTDIVDEDPYAIQIISWCPESRMLCIAGVSAHVIIYRFSKQEVLTEVIPMLEVRLLYEINDVDTPEG
EQPPPLSTPVGSSNPQPIPPQSHPSTSSSSSDGLRDNVPCLKVKNSPLKQSPGYQTELVIQLVWVGGEPP
QQITSLALNSSYGLVVFGNCNGIAMVDYLQKAVLLNLSTIELYGSNDPYRREPRSPRKSRQPSGAGLCDI
TEGTVVPEDRCKSPTSAKMSRKLSLPTDLKPDLDVKDNSFSRSRSSSVTSIDKESRETISALHFCETLTR
KADSSPSPCLWVGTTVGTAFVITLNLPPGPEQRLLQPVIVSPSGTILRLKGAILRMAFLDATGCLMSPAY
EPWKEHNVAEEKDEKEKLKKRRPVSVSPSSSQEISENQYAVICSEKQAKVMSLPTQSCAYKQNITETSFV
LRGDIVALSNSVCLACFCANGHIMTFSLPSLRPLLDVYYLPLTNMRIARTFCFANNGQALYLVSPTEIQR
LTYSQETCENLQEMLGELFTPVETPEAPNRGFFKGLFGGGAQSLDREELFGESSSGKASRSLAQHIPGPG
GIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKYKDKKWYQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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