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Report for CCDS35957.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35957.1 Public Mus musculus 10 Gatd3a 23 108 98 CCDS HistoryNCBI Gene:28295Re-query CCDS DB by CCDS ID:35957.1Re-query CCDS DB by GeneID:28295See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35957.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001242.8 ENSMUSP00000001242.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001242.8Link to Ensembl Protein Viewer:ENSMUSP00000001242.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000001242Re-query CCDS DB by Protein ID:ENSMUSP00000001242
Original member Current member NCBI NM_138601.3 NP_613067.1 Accepted alive Link to Nucleotide Sequence:NM_138601.3Link to Protein Sequence:NP_613067.1Re-query CCDS DB by Nucleotide ID:NM_138601Re-query CCDS DB by Protein ID:NP_613067Link to BLAST:NP_613067.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_613067.1 266 Q9D172 266 100% 0 0

Chromosomal Locations for CCDS 35957.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 78162590 78162718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78163397 78163553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78164838 78164930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78167395 78167514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78168809 78168922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78169373 78169425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78169595 78169729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (801 nt):
ATGGCTGCCGTCAGGGTTTTGGTGGCGCCAAGGCTGGCTTCTGCGCTCCTACCGCTCTCCAGATACCACC
GGGCTCCCTCCCAGCGCGCAGCCCTTCACAGCTCCGCACCGCGGCCCGGGGCCAGGGTGGCGTTGGTGCT
GTCGGGCTGTGGAGTCTATGACGGAACCGAGATCCATGAGGCCTCAGCGATCCTGGTGCACCTGAGCCGA
GGCGGGGCTGAGGTCCAGATCTTTGCTCCCGATGTCCCTCAGATGCACGTGATTGACCACACCAAGGGGG
AGCCTTCTGAGAGGGAAAGCAGGAACGTTTTGGCAGAGTCAGCAAGGATTGCCCGAGGCAAGATTACCAG
CCTGGCTCAGCTCAATGCTGCTAACCATGATGCTGCCATTTTCCCAGGAGGCTTTGGAGCTGCCAAAAAC
CTGAGCACATTCGCCGTGGACGGAAAGGACTGCAAGGTTAACAAGGAGGTAGAGCGGGTCCTGAAGGAGT
TCCACGGGGCCAAGAAGCCCATTGGCTTATGCTGCATCGCTCCTGTCCTCGCAGCCAAAGTGATCAAAGG
TGTGGAGGTCACCGTAGGCCATGAGCAAGAGGAGGGCGGCAAGTGGCCTTATGCTGGAACTGCGGAAGCC
ATCAAAGCCCTGGGTGCCAAGCACTGTGTGAAGGGTGTGACCGAAGCTCATGTAGACCAGAAAAACAAGG
TGGTCACCACCCCAGCCTTCATGTGTGAGACCGCACTCCACCACATCCACGACGGGATCGGGGCCATGGT
AAAGAATGTGCTGGAACTCACGGGAAAGTAA

Translation (266 aa):
MAAVRVLVAPRLASALLPLSRYHRAPSQRAALHSSAPRPGARVALVLSGCGVYDGTEIHEASAILVHLSR
GGAEVQIFAPDVPQMHVIDHTKGEPSERESRNVLAESARIARGKITSLAQLNAANHDAAIFPGGFGAAKN
LSTFAVDGKDCKVNKEVERVLKEFHGAKKPIGLCCIAPVLAAKVIKGVEVTVGHEQEEGGKWPYAGTAEA
IKALGAKHCVKGVTEAHVDQKNKVVTTPAFMCETALHHIHDGIGAMVKNVLELTGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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