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Report for CCDS36148.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36148.1 Public Mus musculus 11 Zfp2 23 108 98 CCDS HistoryNCBI Gene:22678Re-query CCDS DB by CCDS ID:36148.1Re-query CCDS DB by GeneID:22678See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36148.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109128.7 ENSMUSP00000104756.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109128.7Link to Ensembl Protein Viewer:ENSMUSP00000104756.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109128Re-query CCDS DB by Protein ID:ENSMUSP00000104756
Original member Current member EBI ENSMUST00000109129.7 ENSMUSP00000104757.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109129.7Link to Ensembl Protein Viewer:ENSMUSP00000104757.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109129Re-query CCDS DB by Protein ID:ENSMUSP00000104757
Original member Current member EBI ENSMUST00000116378.7 ENSMUSP00000112079.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116378.7Link to Ensembl Protein Viewer:ENSMUSP00000112079.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000116378Re-query CCDS DB by Protein ID:ENSMUSP00000112079
Original member Current member NCBI NM_001044697.2 NP_001038162.1 Accepted alive Link to Nucleotide Sequence:NM_001044697.2Link to Protein Sequence:NP_001038162.1Re-query CCDS DB by Nucleotide ID:NM_001044697Re-query CCDS DB by Protein ID:NP_001038162Link to BLAST:NP_001038162.1
Original member Current member NCBI NM_001044698.2 NP_001038163.1 Accepted alive Link to Nucleotide Sequence:NM_001044698.2Link to Protein Sequence:NP_001038163.1Re-query CCDS DB by Nucleotide ID:NM_001044698Re-query CCDS DB by Protein ID:NP_001038163Link to BLAST:NP_001038163.1
Original member Current member NCBI NM_001044700.2 NP_001038165.1 Accepted alive Link to Nucleotide Sequence:NM_001044700.2Link to Protein Sequence:NP_001038165.1Re-query CCDS DB by Nucleotide ID:NM_001044700Re-query CCDS DB by Protein ID:NP_001038165Link to BLAST:NP_001038165.1
Original member Current member NCBI NM_001294323.1 NP_001281252.1 Accepted alive Link to Nucleotide Sequence:NM_001294323.1Link to Protein Sequence:NP_001281252.1Re-query CCDS DB by Nucleotide ID:NM_001294323Re-query CCDS DB by Protein ID:NP_001281252Link to BLAST:NP_001281252.1
Original member Current member NCBI NM_178447.3 NP_848542.1 Accepted alive Link to Nucleotide Sequence:NM_178447.3Link to Protein Sequence:NP_848542.1Re-query CCDS DB by Nucleotide ID:NM_178447Re-query CCDS DB by Protein ID:NP_848542Link to BLAST:NP_848542.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001038162.1 459 P08043-1 459 100% 0 0
NP_001038163.1 459 P08043-1 459 100% 0 0
NP_001038165.1 459 P08043-1 459 100% 0 0
NP_001281252.1 459 P08043-1 459 100% 0 0
NP_848542.1 459 P08043-1 459 100% 0 0

Chromosomal Locations for CCDS 36148.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 50899835 50901214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1380 nt):
ATGGACAGGGAAGATCTCTGGCATTCAGCTTTGGGGGCTGTCTGGGATCCTACCTGTTGGTTAAAGGGGC
AACAGGAGAGATACCTGGGCCAAGTGACAGTGGCCCAAAAGGAAATCTATAATGAGAAGAGTGTGTGTGG
AGGTAATACAACTGAGAACTCTTCCACTGAGGGATCAATGCTTAATACACCACAAAGCATTCCTGTGACA
CCTTGTAATTGGAATTCATATAGAAAAGATTCTAAACAAAATTCTGAGTTAATGAAAACTTCAAGAATGT
TTGTACAAAAGAAAGTATATGGCTGTGATGAGTGTGGGAAAACCTTCAGGCAGAGTTCATCCCTGCTTAA
GCATCAGAGGATTCACACTGGGGAGAAACCCTACACATGCAACGTGTGTGACAAGCATTTCATCGAACGC
TCCTCCCTCACTGTGCATCAGAGGACTCACACGGGAGAAAAACCCTACAAATGTCATGAGTGTGGGAAAG
CCTTTAGTCAGAGTATGAACCTTACTGTTCATCAGAGAACTCACACTGGAGAGAAGCCTTATCAGTGCAA
AGAGTGTGGGAAAGCATTCCGCAAGAATTCATCCCTTATTCAACACGAAAGGATTCATACTGGAGAGAAG
CCCTACAAATGTCATGATTGTGGGAAAGCTTTTACACAAAGCATGAATCTTACAGTGCACCAGAGAACCC
ATACTGGTGAAAAACCCTATGAATGTAACCAATGTGGCAAAGCCTTCAGCCAAAGCATGCACCTTATTGT
TCATCAGAGAAGTCACACTGGAGAGAAACCCTATGAATGCAGTGAATGTGGGAAAGCCTTTAGTAAAAGC
TCAACTCTCACTCTACATCAGAGAAATCACACTGGAGAAAAGCCCTACAAATGTAACAAGTGTGGTAAGT
CCTTTAGTCAAAGTACATACCTTATAGAACATCAGAGACTTCACTCCGGAGTGAAACCTTTTGAATGCAA
TCAGTGTGGAAAAGCTTTCAGTAAGAATTCTTCCCTTACTCAGCATCGCAGAATTCACACCGGTGAGAAA
CCTTATGAGTGTATGATCTGTGGAAAGCATTTCACTGGAAGATCATCCCTAACTGTACACCAAGTTATAC
ACACTGGAGAGAAGCCCTATGAGTGCACTGAATGTGGAAAGGCATTCAGCCAAAGCGCCTATCTCATTGA
ACATCAAAGGATTCATACTGGTGAAAAACCCTATGAATGTGATCAGTGTGGGAAAGCTTTCATAAAGAAC
TCATCCCTTATAGTGCACCAGAGGATACATACAGGAGAGAAACCCTATCAGTGCAATGAATGTGGAAAGT
CCTTCAGTAGGAGTACAAACCTTACAAGACATCAGAGGACTCATACATGA

Translation (459 aa):
MDREDLWHSALGAVWDPTCWLKGQQERYLGQVTVAQKEIYNEKSVCGGNTTENSSTEGSMLNTPQSIPVT
PCNWNSYRKDSKQNSELMKTSRMFVQKKVYGCDECGKTFRQSSSLLKHQRIHTGEKPYTCNVCDKHFIER
SSLTVHQRTHTGEKPYKCHECGKAFSQSMNLTVHQRTHTGEKPYQCKECGKAFRKNSSLIQHERIHTGEK
PYKCHDCGKAFTQSMNLTVHQRTHTGEKPYECNQCGKAFSQSMHLIVHQRSHTGEKPYECSECGKAFSKS
STLTLHQRNHTGEKPYKCNKCGKSFSQSTYLIEHQRLHSGVKPFECNQCGKAFSKNSSLTQHRRIHTGEK
PYECMICGKHFTGRSSLTVHQVIHTGEKPYECTECGKAFSQSAYLIEHQRIHTGEKPYECDQCGKAFIKN
SSLIVHQRIHTGEKPYQCNECGKSFSRSTNLTRHQRTHT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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