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Report for CCDS36164.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36164.1 Public Mus musculus 11 Gm12253 23 108 98 CCDS HistoryNCBI Gene:624860Re-query CCDS DB by CCDS ID:36164.1Re-query CCDS DB by GeneID:624860See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 36164.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108825.1 ENSMUSP00000104453.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108825.1Link to Ensembl Protein Viewer:ENSMUSP00000104453.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108825Re-query CCDS DB by Protein ID:ENSMUSP00000104453
Original member Current member NCBI NM_001045542.1 NP_001039007.1 Accepted alive Link to Nucleotide Sequence:NM_001045542.1Link to Protein Sequence:NP_001039007.1Re-query CCDS DB by Nucleotide ID:NM_001045542Re-query CCDS DB by Protein ID:NP_001039007Link to BLAST:NP_001039007.1

Chromosomal Locations for CCDS 36164.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 58434504 58434588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58434790 58434900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58435357 58435500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58436666 58436794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58439886 58440006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58440957 58441056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (690 nt):
ATGGAGGTCACCATGTCCTGGTTCTTGGTCCTGAAGAGCCTCCTTGCCGTCTGCATCATCTCTCACTTAT
CTGTCAGCTCTGTGGAGAGTTATGCTTGTATACAAGAAGAACCACCCTTTAATAAAGAATGCTATCCTAA
TTCAAGCACGTGTGAATCCTCTAAAGGTTGTTTCTCCCTATGGCTGGAATTGGGAGCACATCAAACATAT
GTGCAGAAAGGCTGTTCTGAAGACAGTTGTACTGGACTAGAATTCTCGGTAACAGTGGAGAGGCATTTGG
CATTGAGCTATGACCATCGCTGCTGCTACACTGAACACTGTAGCAAAGAGCCCATTAAGGTGCCTGCATT
ATCTTCAGAACCCAATGGCGTTGAATGTCCTGCCTGCTTCAGTGAATGTGGCACATGTAGACCTGTTTTA
CTAAAGTGCACGGGGGAGGAGACAATGTGCATTAAGGCTACTGCCAGAGACATCATCAAGCTACAAGCCA
TGGGCTGTGCGACCAAGACTGCCTGCAACCTGAAGAACGTGACCATCACGGATAATCTTAAATTTGATAC
CTCCTGTGTCAATGGGAGCCCTCTGCTCAGCTCTCGGCTACTGCTCCAACACCATGCCTGCCTGCCTGCT
GCTACGCTCCCCGCCATGACGGTTATGGAGTTATCCTCTGGAACTGTGAGCCCCCAATAA

Translation (229 aa):
MEVTMSWFLVLKSLLAVCIISHLSVSSVESYACIQEEPPFNKECYPNSSTCESSKGCFSLWLELGAHQTY
VQKGCSEDSCTGLEFSVTVERHLALSYDHRCCYTEHCSKEPIKVPALSSEPNGVECPACFSECGTCRPVL
LKCTGEETMCIKATARDIIKLQAMGCATKTACNLKNVTITDNLKFDTSCVNGSPLLSSRLLLQHHACLPA
ATLPAMTVMELSSGTVSPQ


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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