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Report for CCDS36197.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36197.2 Public Mus musculus 11 Zbtb4 23 108 98 CCDS HistoryNCBI Gene:75580Re-query CCDS DB by CCDS ID:36197.2Re-query CCDS DB by GeneID:75580See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 36197.1
The coding region has been updated to extend the C-terminus to one that is more supported by available conservation and transcript data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 36197.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108639.7 ENSMUSP00000104279.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108639.7Link to Ensembl Protein Viewer:ENSMUSP00000104279.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108639Re-query CCDS DB by Protein ID:ENSMUSP00000104279
Original member Current member EBI ENSMUST00000108640.7 ENSMUSP00000104280.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108640.7Link to Ensembl Protein Viewer:ENSMUSP00000104280.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108640Re-query CCDS DB by Protein ID:ENSMUSP00000104280
Original member Current member NCBI NM_001363178.1 NP_001350107.1 Accepted alive Link to Nucleotide Sequence:NM_001363178.1Link to Protein Sequence:NP_001350107.1Re-query CCDS DB by Nucleotide ID:NM_001363178Re-query CCDS DB by Protein ID:NP_001350107Link to BLAST:NP_001350107.1
Original member Current member NCBI NM_029348.2 NP_083624.2 Accepted alive Link to Nucleotide Sequence:NM_029348.2Link to Protein Sequence:NP_083624.2Re-query CCDS DB by Nucleotide ID:NM_029348Re-query CCDS DB by Protein ID:NP_083624Link to BLAST:NP_083624.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350107.1 982 Q5F293 982 100% 0 0
NP_083624.2 982 Q5F293 982 100% 0 0

Chromosomal Locations for CCDS 36197.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 69775871 69776889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69777472 69779401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2949 nt):
ATGCCACCCCCTGCAGAGGTGACGGACCCATCCCATGCCCCAGCTGTCCTGCATCAGCTCAATGAGCAGC
GGCTCCGTGGCCTCTTCTGTGACGTCACCCTCATAGCTGGAGACACCAAGTTCCCTGCTCACCGCAGTGT
CCTGGCCGCCTCTAGTCCCTTCTTCAGAGAAGCCCTACTAGCTTCAGCCCCACTGCCCCTTCCACCAGTT
ACTGGCGGCTCAGCCCCCAGCCCCGCAACCACCACAGCTGCCTCCTCTTCGTCCTCCTCTCCCCCTCCAG
CCTCTCCTCACTCTTCATCTCCTCCCCGGGTGCTAGAGCTGCCCGGGGTCCCAGCAGCTGCCTTCTCCGA
TGTCCTCAACTTCATCTATAGTGCCCGGCTTGCACTCCCTGGCGGTGGTGGGGATGGGGCAGCTGTGGCA
GAGATTGGAGCTCTGGGCCGGAGGCTGGGTATCTCCCGTCTACAGGGCCTGGGGGAAGGAGGTGATACTT
GGGTACCACCTGCCCCAACTTCCATGGTCACCTCAGATCCTACTGAGGATGGTTTGGGGGCAGGGCCTAG
AACAGATGGAGAGTGGGTGGGTGACAAAGCTGAGGCCCTGACTCCTGACTCCCAGCCCCGGCGGCCCTTT
CCTTGCCCTCGATGTGGAAAAAGCTTCATCCATCCCAAGCGACTACAGACCCACGAGGCTCAGTGTCGAC
GAGGGTCCAACACTCGGGGGTCTGCAGGGCTGGGGCCTGGAGTCTCTGGCTCTGGGGGTCCTGCAGGAGT
GGATGCCTCTGCCCTGCCACAACCAGTGGGCTTCAGAGATGGCCCTGAGCATGTGGTGAAGGTTGTGGGC
GGCCACGTGCTCTATGTGTGTGCGGCCTGTGAGCGTTCCTACGTGACCCTGTCCAGCCTGAAGCGGCACA
GCAATGTACACTCGTGGCGGAGGAAGTACCCCTGCCGCTACTGTGAGAAGGTGTTTGCCCTGGCTGAGTA
CCGCACCAAGCACGAGGTGTGGCACACTGGGGAGCGCAGGTACCAGTGCATCTTCTGCTGGGACACCTTT
GTCACCTATTATAACCTGAAGACCCACCAGCGAGCCTTCCATGGCATTAGCCCTGGCCTCCTAGCCAGTG
AGAAGACACCCAATGGAGGCTACAAACCCAGGCTTAATACCCTCAAGCTGTACCGCCTGCTCCCTATGCG
GGCGGCCAAGCGGCCCTACAAGACCTACAGTCAGGGAGCCCCTGAGGCCCCTCTTTCTCCAAGCCTCCAC
ACACCGGCCCCCGCGGCAATGCCAGCCAGCCCCCAACCCCTACCCCCACCCGCCCCAGAGCCTGGTCCTC
CCCCCTCTGTCATCACCTTTGCTCATCCGGCTCCCTCTGTCATTGTCCACGGGAGCAGTAGTAGTGGTGC
AGCCGGGGGCGGACCAGCCGGCACAGGAGGGTCCCAAGCTGCCTCAGTCATCACTTATACGACTCCCCCA
AGACCCCCCAAGAAACGAGAGTACCCACCTCCTCCCCCTGAGCCTACAGCAACACCCACCAGCCCAGCCT
CCACCGCCGTCAGCCCAGCCACAGCTGCAGGGCCAGCCACAGCCACAGAGGAGGCCAAGGGCCGGAATCT
GCGGGCTGGGAGGACTCTGACTTACACAGCCAAACCCGTGGGTGGGTTGAGTGGGAGTGGGGGTTCCCCC
ACAGGGACTGGCCGAGGCTCTTCTCAGCTTCAGGCTCCACCTCCACTGTGTCAGATCACTGTGCGAATTG
GGGAAGAGGCCATTGTCAAGCGCCGCATCTCAGAAACTGACCTGCGTCCTGGAGAGCTGAGTGGAGAGGA
AGTAGAGGAGAGCGAGGAAGAGGAGGAGGAAGAGGAGGAGGAGGACCAGGAGGAACAAGAGGAATCGAAG
GCTGGAGGGGAAGATCAGCTTTGGAGACCCTACTATTCATACAAGCCTAAGCGCAAGGCTGGAGCTACTG
CCGGCGGGGCCAGCGGGGTCAGTGGACTGCCCCGAGGACGAAGACCACCACGCTGGAGGCAAAAGCTGGA
ACGAAGGGGCTGGGAGGAGACCCCATCAGTGGAGGGCCCAGGAGGACGAGGACGTGGTGAGCGTAGGCAC
CGTTGTGGGGACTGTGCCCAGGCCTTTGCCACTGTGAGGAAGCTGAGAAAGCACCAGGAAGCCCATAGTG
GAGGCTCCCACACCTCCAGGACTGGGAGGAGGTCTTCCACCCGCTTCACCTGTCCCCACTGTGCCAAGGT
GTGCAAGACGGCAGCTGCCCTGAACCGACATGGGCAAAGGCATGCTGTGGAACGGCCCGGGGGCACTCCC
ACACCTGTCATTGCCTATTCCAAAGGAAGCATTGGCACCAGGCCCACTGACGTCAAGGAGGAGGCCCCCC
AGGAGATGCAAGTGTCCTCTTCCAGTGGGGAGGCAGGCAGTGGTAGCGCTGCCGCTGCTGAAGCTTCTGA
GTCTGCCTCACTCCAGGACCCGGTCATCTCTGGGGGTGAGGAGCCTCCAGTAGCAGGTGGGGGCAGCTAT
GTATACCCACCTGTGCAGGAATTTCCCCTGGCCCTGATAGGAGGCAGCCGGGAGCCCAGTGCCGGCAAAG
GAAAACCTGGGAATGAGGGTTCCTTGGGAGCTTCTGAGGGTGACCGGATGGAGGGGATGGGGACTGCCAA
AGTCACCTTCTACCCTGAGCCCTACCCACTTGTCTATGGCCCCCAGCTCCTTGCTGCCTACCCTTACAAC
TTCAGCAACTTGGCTGCTCTCCCAGTTGCTCTCAACATGGTCCTACCTGACGAAAAAGGTGGTGGGGCCC
TTCCCTTCCTACCAGGGGTCTTTGGCTACGCAGTGAATCCTCAAGCGGCGCCACCCACTCCCCCTCCCCC
TCTCCCTCTGCCAGTTTCCCCTAAGGGAATAGGGGGAATGACAGGGGTAGAGAGAACCCAGAAGGGGGAT
GTGGGGTGA

Translation (982 aa):
MPPPAEVTDPSHAPAVLHQLNEQRLRGLFCDVTLIAGDTKFPAHRSVLAASSPFFREALLASAPLPLPPV
TGGSAPSPATTTAASSSSSSPPPASPHSSSPPRVLELPGVPAAAFSDVLNFIYSARLALPGGGGDGAAVA
EIGALGRRLGISRLQGLGEGGDTWVPPAPTSMVTSDPTEDGLGAGPRTDGEWVGDKAEALTPDSQPRRPF
PCPRCGKSFIHPKRLQTHEAQCRRGSNTRGSAGLGPGVSGSGGPAGVDASALPQPVGFRDGPEHVVKVVG
GHVLYVCAACERSYVTLSSLKRHSNVHSWRRKYPCRYCEKVFALAEYRTKHEVWHTGERRYQCIFCWDTF
VTYYNLKTHQRAFHGISPGLLASEKTPNGGYKPRLNTLKLYRLLPMRAAKRPYKTYSQGAPEAPLSPSLH
TPAPAAMPASPQPLPPPAPEPGPPPSVITFAHPAPSVIVHGSSSSGAAGGGPAGTGGSQAASVITYTTPP
RPPKKREYPPPPPEPTATPTSPASTAVSPATAAGPATATEEAKGRNLRAGRTLTYTAKPVGGLSGSGGSP
TGTGRGSSQLQAPPPLCQITVRIGEEAIVKRRISETDLRPGELSGEEVEESEEEEEEEEEEDQEEQEESK
AGGEDQLWRPYYSYKPKRKAGATAGGASGVSGLPRGRRPPRWRQKLERRGWEETPSVEGPGGRGRGERRH
RCGDCAQAFATVRKLRKHQEAHSGGSHTSRTGRRSSTRFTCPHCAKVCKTAAALNRHGQRHAVERPGGTP
TPVIAYSKGSIGTRPTDVKEEAPQEMQVSSSSGEAGSGSAAAAEASESASLQDPVISGGEEPPVAGGGSY
VYPPVQEFPLALIGGSREPSAGKGKPGNEGSLGASEGDRMEGMGTAKVTFYPEPYPLVYGPQLLAAYPYN
FSNLAALPVALNMVLPDEKGGGALPFLPGVFGYAVNPQAAPPTPPPPLPLPVSPKGIGGMTGVERTQKGD
VG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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