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Report for CCDS36236.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36236.1 Public Mus musculus 11 Dhrs13 23 108 98 CCDS HistoryNCBI Gene:70451Re-query CCDS DB by CCDS ID:36236.1Re-query CCDS DB by GeneID:70451See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36236.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021187.11 ENSMUSP00000021187.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021187.11Link to Ensembl Protein Viewer:ENSMUSP00000021187.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000021187Re-query CCDS DB by Protein ID:ENSMUSP00000021187
Original member Current member NCBI NM_183286.2 NP_899109.2 Accepted alive Link to Nucleotide Sequence:NM_183286.2Link to Protein Sequence:NP_899109.2Re-query CCDS DB by Nucleotide ID:NM_183286Re-query CCDS DB by Protein ID:NP_899109Link to BLAST:NP_899109.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_899109.2 376 Q5SS80-1 376 100% 0 0

Chromosomal Locations for CCDS 36236.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 78032372 78032498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78032585 78032703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78034013 78034136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78034275 78034586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78036862 78037310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1131 nt):
ATGGAGATGCTGCTGCTGGGCGCCGGGCTGCTGCTGGGCGCCTACGTGCTTGTCTACTACAACCTGGTGA
AGGCCCCGTCGTGCGGCGGCATCGGCAGCCTTCGGGGCCGCACGGTCGTGGTCACTGGCGCCAATAGCGG
CATCGGAAAGATGACAGCGCTGGAGCTGGCGCGCCGGGGAGCGCGCGTGGTGCTGGCCTGCCGCAGCCGG
GAGCGCGGGGAAGCGGCCGCTTTCGACCTCCGTCAGGAAAGTGGAAACAATGAGGTCATCTTCATGGCCT
TGGACTTGGCCAGTCTGGCCTCCGTGCAGGCCTTTGCCACAGCCTTCTTAAGCTCTGAGCCAAGGCTGGA
CGTCCTCATCCACAATGCAGGGATCAGCTCCTGTGGCCGGACTCGGGAAACCTTTAACCTGCTGTTGCGA
GTGAACCATGTTGGCCCTTTTCTGCTGACGCACTTGTTGCTACCCCGCCTGAGGTCATGTGCCCCCAGCC
GTGTGGTAATAGTGTCATCGGCTGCCCACCGACGTGGTCGTCTCGACTTCACACGTCTGGACTGCCCAGT
GGTGGGCTGGCAGCAGGAGCTTCGGGCGTACGCTGACAGCAAACTAGCCAACGTGCTGTTTGCCCGGGAG
CTTGCCACCCAGCTTGAGGGCACTGGTGTTACCTGCTATGCGGCCCACCCAGGACCTGTGAACTCGGAGC
TCTTCCTGCGTCATCTTCCTGGATGGCTGCGTCCTATTTTGCGCCCACTGGCTTGGCTGGTGCTCCGGGC
ACCTCAAGGGGGTGCCCAGACACCCCTGTACTGCGCTCTGCAGGAGGGCATTGAGCCCCTCAGCGGGAGA
TATTTTGCCAACTGCCACGTGGAGGAGGTCTCCCCAGCTGCTAGAGATGACCAGGCTGCTCAAAGGCTAT
GGAAAGCTACCAAGAAGTTGGCAGGGCTTGCACCTGGAGACGATGATGATGACCCTGATGAAGAGCCGGA
ACCTGAGGATCCCAGGGCCCCATCTTCTCAGAGCGCCCCCAGCCCTGAGAAAACCACAGTTTCTGGACCT
TCTCATAGCTATCAGGGCTCGCAAGACTTATCCAAATTGACACAGCGAAGAATTCAGGTGAAGGATGAAC
CTACACCCTAA

Translation (376 aa):
MEMLLLGAGLLLGAYVLVYYNLVKAPSCGGIGSLRGRTVVVTGANSGIGKMTALELARRGARVVLACRSR
ERGEAAAFDLRQESGNNEVIFMALDLASLASVQAFATAFLSSEPRLDVLIHNAGISSCGRTRETFNLLLR
VNHVGPFLLTHLLLPRLRSCAPSRVVIVSSAAHRRGRLDFTRLDCPVVGWQQELRAYADSKLANVLFARE
LATQLEGTGVTCYAAHPGPVNSELFLRHLPGWLRPILRPLAWLVLRAPQGGAQTPLYCALQEGIEPLSGR
YFANCHVEEVSPAARDDQAAQRLWKATKKLAGLAPGDDDDDPDEEPEPEDPRAPSSQSAPSPEKTTVSGP
SHSYQGSQDLSKLTQRRIQVKDEPTP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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