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Report for CCDS36567.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36567.1 Public Mus musculus 12 Aspg 23 108 98 CCDS HistoryNCBI Gene:104816Re-query CCDS DB by CCDS ID:36567.1Re-query CCDS DB by GeneID:104816See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 36567.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079400.5 ENSMUSP00000078369.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079400.5Link to Ensembl Protein Viewer:ENSMUSP00000078369.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000079400Re-query CCDS DB by Protein ID:ENSMUSP00000078369
Original member Current member NCBI NM_001081169.1 NP_001074638.1 Accepted alive Link to Nucleotide Sequence:NM_001081169.1Link to Protein Sequence:NP_001074638.1Re-query CCDS DB by Nucleotide ID:NM_001081169Re-query CCDS DB by Protein ID:NP_001074638Link to BLAST:NP_001074638.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074638.1 564 A0JNU3 564 100% 0 0

Chromosomal Locations for CCDS 36567.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 112106892 112106973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112112192 112112300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112112981 112113092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112114380 112114505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112115567 112115650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112116401 112116527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112119954 112120066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112120865 112121047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112121153 112121266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112121750 112121863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112122944 112123039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112123290 112123453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112124810 112124896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112126312 112126411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112126662 112126745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1695 nt):
ATGGCGCGTGCTATGGGACCAGAGCGGCGGCTGCTGGCCATTTACACTGGCGGCACCATCGGCATGCGGA
GCGAAGGCGGAGTGTTGGTACCTGGCAGAGGCCTGGCTGCCGTCCTGAAGACACTTCACATGTTCCACGA
TGAAGAGTATGCACAGGCCCACAGCCTGCCCGAGGATACGCTGGTGCTGCCCCCGGCCAGCCCTGACCAG
AGGATCATCTACACGGTGCTGGAGTGCCAGCCACTCTTCGACTCCAGTGACATGACCATCACTGAGTGGG
TTCAGATTGCCCAAACCATAGAGAGACACTACGCACAGTACCAGGGCTTTGTTGTCATCCATGGCACAGA
CACCATGGCCTTTGCTGCCTCAGTGCTCTCTTTCATGCTGGAAAATCTGCAGAAACCAGTCGTCCTCACG
GGTGCCCAGGTACCTATCCACGCACTGTGGAGTGACGGCCGTGAGAACCTGCTGGGGGCTCTGCTCATGG
CTGGCCAATACGTCATCCCTGAGGTCTGCCTGTTCTTCCAGAATCAGCTCTTCCGGGGCAATCGGACAAC
CAAGGTGGACGCTCGGAGGTTTGCCGCCTTCTGCTCCCCTAACCTGCCCCCTCTAGCCACTGTGGGCGCG
GATGTCACAATCAACCGTGAGCTGGTACGGAAGGCCTGCGGGAAGAGCCATCTGGTGGTCCACAGTAGCA
TGGAGCCTGACGTGGGCCTACTGCGCCTCTACCCTGGAATTCCCGCCTCCCTGGTCCGGACCTTCCTCCA
GCCCCCACTGAAAGGCGTGGTCATGGAGACCTTCGGCTCTGGGAATGGGCCCACCAAGCCAGACCTACTA
CAGGAGCTTCGGGTGGCGGCCGAACAAGGCCTGATCATTGTCAACTGTACCCATTGCCTTCAGGGGGCTG
TGACTTCGGACTATGCATCTGGCATGGCCATGGCAGGAGCTGGCATAGTCTCGGGCTTCGACATGACATC
AGAGGCTGCCCTGGCCAAACTGTCCTATGTGCTGGGCCAGCCAGGGCTGAGCCTGAATGACAGGAAGAAG
CTGCTGGCCAAGGATCTTCGTGGGGAGATGACGCTGCCTGCAACAGATGTCTTGCTGCAGGATGGCATGC
TGGGCTGCAGGGTAGCTTGGCTTCTCAGTATGAATGGCAGCCAGGAGGCTGATACCATGAAGGATGTTCT
TCTGCCCGGCCTGGCCCTGGCTGCAGCTCACGCTGGTGACCTGGACACCCTGCAGGCCTTTGTGGAACTG
GACAGAGACCTAAACCTGAAGGACTATAGTGGTCAAACCCCACTGCATGTGGCTGCACGGAGGGGCCATG
CCGCAGTGGTTACCATGCTGCTGCAGAGGGGTGCGGATGTGGATGCCCGTAATGAGGATGGTCAGAGCCC
ACTATTGCTGGCCGTGAGGGGCAGGCATCAGAGTGTCATTGGGCTGCTGAGAGCTGCTGGGGCCCGCCTG
TCTCCCCAGGAGCTGGAGGACGTTGGGACAGAGCTGTGCAGGCTGGCATCAAGGGGAGACAGCGAAGGCC
TGCGGGCATGGTGGCAGGCTGGGGCTGACCTGGGACAGCCAGACTATGATGGACACTGTGCCCTGCAAGT
AGCTGAAGCAGCTGGAAATGCAGATGTGGTGGCCCTGCTACAGAGCTTTAAGGACAGTGTCTGTGCCCAG
CCCCAGCCCCACTAG

Translation (564 aa):
MARAMGPERRLLAIYTGGTIGMRSEGGVLVPGRGLAAVLKTLHMFHDEEYAQAHSLPEDTLVLPPASPDQ
RIIYTVLECQPLFDSSDMTITEWVQIAQTIERHYAQYQGFVVIHGTDTMAFAASVLSFMLENLQKPVVLT
GAQVPIHALWSDGRENLLGALLMAGQYVIPEVCLFFQNQLFRGNRTTKVDARRFAAFCSPNLPPLATVGA
DVTINRELVRKACGKSHLVVHSSMEPDVGLLRLYPGIPASLVRTFLQPPLKGVVMETFGSGNGPTKPDLL
QELRVAAEQGLIIVNCTHCLQGAVTSDYASGMAMAGAGIVSGFDMTSEAALAKLSYVLGQPGLSLNDRKK
LLAKDLRGEMTLPATDVLLQDGMLGCRVAWLLSMNGSQEADTMKDVLLPGLALAAAHAGDLDTLQAFVEL
DRDLNLKDYSGQTPLHVAARRGHAAVVTMLLQRGADVDARNEDGQSPLLLAVRGRHQSVIGLLRAAGARL
SPQELEDVGTELCRLASRGDSEGLRAWWQAGADLGQPDYDGHCALQVAEAAGNADVVALLQSFKDSVCAQ
PQPH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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