NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS36750.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36750.1 Public Mus musculus 13 Scamp1 23 108 98 CCDS HistoryNCBI Gene:107767Re-query CCDS DB by CCDS ID:36750.1Re-query CCDS DB by GeneID:107767See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36750.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022197.14 ENSMUSP00000022197.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022197.14Link to Ensembl Protein Viewer:ENSMUSP00000022197.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000022197Re-query CCDS DB by Protein ID:ENSMUSP00000022197
Original member Current member NCBI NM_029153.1 NP_083429.1 Accepted alive Link to Nucleotide Sequence:NM_029153.1Link to Protein Sequence:NP_083429.1Re-query CCDS DB by Nucleotide ID:NM_029153Re-query CCDS DB by Protein ID:NP_083429Link to BLAST:NP_083429.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083429.1 338 Q8K021 338 100% 0 0

Chromosomal Locations for CCDS 36750.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 94203999 94204163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94208136 94208253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94210577 94210678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94224895 94225054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94229714 94229842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94232072 94232180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94233082 94233180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94252993 94253070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94285220 94285276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1017 nt):
ATGTCGGATTTTGACAGCAACCCGTTTGCGGATCCGGATCTCAACAACCCGTTCAAGGACCCATCTGTCA
CACAGGTGACAAGAAATGTGCCACCGGGACTTGATGAATACAACCCTTTCTCCGACTCTCGCACGCCTCC
ACCAGGCAGTGTGAAAATGCCTAATGTACCCAACACCCAGCCAGCAATAATGAAGCCAACAGAGGAACAT
CCAGCTTACACACAGATCACAAAGGAACATGCCTTGGCTCAAGCTGAACTGCTCAAGCGCCAAGAAGAGC
TGGAGAGAAAAGCTGCAGAGTTGGATCGTCGTGAGCGCGAGATGCAGAACCTGAGCCAGCATGGGAGAAA
AAATAATTGGCCTCCTCTTCCTAGCAATTTTCCCGTGGGACCTTGTTTCTATCAAGACTTTTCTGTTGAC
ATTCCTGTAGAATTCCAGAAGACGGTGAAGCTTATGTACTACCTATGGATGTTCCATGCAGTGACCCTGT
TTCTGAACATCTTCGGATGCTTGGCCTGGTTTTGTGTTGATTCCTCGAGAGCAGTCGACTTTGGGCTGAG
CATCCTGTGGTTCCTGCTCTTCACTCCCTGCTCCTTTGTCTGTTGGTACAGACCGCTGTACGGGGCCTTC
AGGAGCGACAGTTCCTTCAGGTTCTTTGTGTTCTTCTTCGTCTATATTTGTCAGTTTGCTGTCCATGTGC
TCCAGGCTGCAGGATTTCATAACTGGGGAAACTGTGGTTGGATCTCGTCCCTCACTGGTCTCAACAAGAA
CATTCCAGTCGGGATCATGATGATAATCATCGCAGCGCTCTTCACAGCGTCCGCGGTCATCTCGCTCGTC
ATGTTTAAAAAAGTGCATGGACTGTACCGCACAACAGGTGCTAGTTTTGAGAAGGCCCAGCAAGAGTTTG
CAACGGGAGTGATGTCCAATAAAACTGTTCAGACAGCGGCTGCAAACGCCGCCTCAACCGCAGCAACCAG
CGCGGCGCAGAACGCCTTCAAGGGTAACCAGATGTAG

Translation (338 aa):
MSDFDSNPFADPDLNNPFKDPSVTQVTRNVPPGLDEYNPFSDSRTPPPGSVKMPNVPNTQPAIMKPTEEH
PAYTQITKEHALAQAELLKRQEELERKAAELDRREREMQNLSQHGRKNNWPPLPSNFPVGPCFYQDFSVD
IPVEFQKTVKLMYYLWMFHAVTLFLNIFGCLAWFCVDSSRAVDFGLSILWFLLFTPCSFVCWYRPLYGAF
RSDSSFRFFVFFFVYICQFAVHVLQAAGFHNWGNCGWISSLTGLNKNIPVGIMMIIIAALFTASAVISLV
MFKKVHGLYRTTGASFEKAQQEFATGVMSNKTVQTAAANAASTAATSAAQNAFKGNQM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH