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Report for CCDS37001.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37001.1 Public Mus musculus 14 Lmo7 23 108 98 CCDS HistoryNCBI Gene:380928Re-query CCDS DB by CCDS ID:37001.1Re-query CCDS DB by GeneID:380928See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37001.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100337.9 ENSMUSP00000097910.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100337.9Link to Ensembl Protein Viewer:ENSMUSP00000097910.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000100337Re-query CCDS DB by Protein ID:ENSMUSP00000097910
Original member NCBI NM_201529.2 NP_963287.2 Updated not alive Link to Nucleotide Sequence:NM_201529.2Link to Protein Sequence:NP_963287.2Re-query CCDS DB by Nucleotide ID:NM_201529Re-query CCDS DB by Protein ID:NP_963287
Current member NCBI NM_201529.3 NP_963287.2 Accepted alive Link to Nucleotide Sequence:NM_201529.3Link to Protein Sequence:NP_963287.2Re-query CCDS DB by Nucleotide ID:NM_201529Re-query CCDS DB by Protein ID:NP_963287Link to BLAST:NP_963287.2

Chromosomal Locations for CCDS 37001.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 101730157 101730225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101794241 101794311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101807454 101807523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101840872 101840978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101875452 101875482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101876806 101876919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101880803 101881001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101884162 101884414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101885291 101885572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101886937 101887656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101888677 101888706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101896467 101896584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101898557 101898699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101900071 101900644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101902064 101902369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101910766 101910880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101911999 101912160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101913240 101913346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101914277 101914337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101915688 101915744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101917631 101917656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101917940 101918044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101918612 101918704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101919209 101919651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101920489 101920554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101922097 101922149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101926096 101926309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101929176 101929451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101931172 101931280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101932570 101932672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101933896 101933918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5100 nt):
ATGGAAGGGATGGAGGACGCCGAGGCCGATTGCTCTGTTGCATTCGCAGAGGCTCAGAGATGGGTGGAGG
CTGTAACTGAGAAGAATTTTGAAACAACGGATTTTCGAGCCTCTCTAGAAAATGGTGTTCTGTTGTGCGA
CTTGATTAATAAGCTCAAACCTGGCGTCGTTAAGAAGATCAATAGACTGTCTACCCCAATAGCAGGTTTG
GATAACATAAATGTTTTTTTGAGAGCTTGTGAACAGATTGGATTGAAAGAAGCCCAGCTTTTTCATCCGG
GGGATCTACAGGACTTATCAAACCGAGTCACCGTCAAGCAAGAAGAGACTGACAGGAGACTGAAAAATGT
TTTGATAACTTTGTACTGGCTGGGAAGAAAAGCACAAAGTAACCCCTACTATAATGGTCCCTATCTCAAT
TTGAAAGCTTTTGAGACTCTTTTAGGGCAAGCTTTGACTAAGGCACTTGAAGATTCCAGCTGCCTGAAAA
GAAGTGGCCGGGACAGTGGCTACGGGGACATCTGGTGTCCTGACAGAGGAGAATTTCCTGCCCCTCCAGG
TAGCCACAGAAGGGAAGATTCCTTTGAGAGCTTGGACTCGCTGGGGTCCAGATCTCTGACCAGCTGTTCC
TCAGACTTCACTCTGAGAGTTGGGAAGGAAGGTTGCGAAAGTGACATCGATTGGGAATTTACATTCAAAA
TGCAGGATTACAACAAAGATGATATGTCCTACCGAAGGATTTCAGCCATTGAGCCAAAGTCAGCTCTCCC
GTTCAATCGTTTCTTGCCGAACAAAAGCAAGCAGCCGTCCTATGTGCCAGCACCTTTGAGGAAGAAGAGG
CCAGACAAACACGAGGATAACAGGAGGAGCTGGGCAAGCCCGGTCTACACAGAAACAGACGGAACATTTT
CAAGTACCCAGAGGAGAACCTGGGGTCCCAAGATGGAGACCTGGCACACAGTCCAAGAAACTTCCACCTC
TTCTTGGTGTGTAGAAGAGGAAGAGGAAAAGCTCACGCGCATGCCCAACATTGTGAAGGATGATCTGTAT
GTGCGGAAGCTTAGCCCCGTCATGCCAAGTCCAGGGAGCTCTTTTGATCAGTTCCTTCCCAAATGTTGGA
CTCCAGAAGATATGAACTGGAAAAAAATTAAAAGAGAGACTTATAAGCCATGGTATAAGGAATTTCAGGG
ATTCAGTCAGTTTTTATTGCTTCAGGCCCTCCAAACCTACTCTGATGACATCTTGTCCTCGGAAACAAGT
GTCAAACTCGATCCTACCTCTGGCCCCAGGCTCATAACTCGCAGGAAGAATCGCTCTCCCGCACCAGGCT
ATCGAGCCCATGACCTTGAGCTGCCAGCCCTAGATCCCGACTTAGAAAATGATGATTTCTTTGTCAGAAA
AACAGGGGCTTTCCATGCAAATCCGTGTGTCCTTCGAGCCTTTGAAGACTTTAGAAGTTTCTCGGAGCCA
GACGATGCCGTGGAACGAGATATAATTTTGCAGTGTCGGGAAGGTGAACTCGTACTTCCAGATTTAGAAA
AGGATGATATGATTGTCCGCAGGATTCCAGCTCAGAAGAAAGAAGTGCCCCTTTCTGGGGCCCCGGATAG
GTACCAGCCAGTCCCTTTCCCTGAACCCTGGACCCTACCTCCAGAAATCCAAGCGAAGTTTCTCTCTGTG
CTCGAAAGGACACGCCCACCCAAAGAACAAAGCAGCGGCTGTAGAGTGTTAGTCCCTTCCTATCGACAGA
AGAAAGACGACATGTTGGCTCGCAAGATCCAGTCTTGGAAGCTGGGGACTGCTGTACCTCCCATCAGTTT
CAAGCCTGGCCCCTGCAGCGAGGCCGACCTGCAGAAGTGGGAGGCCATCTGGGAGGCCAGCAGGCTTAGG
CACAGGAAGCGGCTGATGGTTGAGAGACTCTTTCAAAAGATCTATGGTGAGAATGGGAGCAAGTCCATGA
GCGATGTCAGCGCAGAGGATGTTCAGAACCTGCGTCAGGTGCGCTACGAGGAGATGCAGAAAATAAAATC
CCAGCTGAAAGAACAAGATCAGAAATGGCAGGATGACCTTGCAAAATGGAAAAACCGCCGGAAGAGTTAC
ACTTCAGATCTGCAGAAGAAAAAGGAAGAGAGGGAAGAGATTGAGAAGCAGGCACTGGAGAAGTCTGACC
GCAGCTCCAAGACATTTAGGGAAATGCTGCAGGACAGGGAATCTCGAGGTTCTACAGTTACGTCTTGGAG
GAGGACCTATTCCTCTGATGACATCCTCGATGATGGAGTGCTCCCTCCTACAGTGACTCTGTCAGAAACT
AGTTACCAGAGCGAGAGACTAGAAGATGAGGCAAGAGCGCATCCTGCTGAGATGCCCAAAGAAGATTCCA
CAACATTTGCAAATAGAGAGGACAGTGTAGTAGCTGAGACTCAGCTTGCTTCTCACAGTCCTGAAGAGCA
ACGTCTGGCCCCTTCTCCTTCTGAGGAACCGCGCCAGGCCTCTGGATCTTCTGCAGAACCGCACCAGGCC
CCGTTGCTGTCCACAGAACCACGCCGGACCCCTTTGCCTTCCGAGGAACCACACCAGGCCTCTCTATCTT
CTACACTACAGCGTCCATCCTCACTCTCTTCTCAGCAGTCATGGAGTACAAGAGCAGAGTCCACTCGGAT
TTCAGCTTCTCTCCCTAGAAGTTACCAGAGAACCGATACAGCCAGGTTAACATCTGTGGTCACAGCGAGA
CCTTTTGGCACATCTTCAAGGGGAATCTCCTCACTGCCCAGATCCTACACGATGGATGATGGCTGGAAAT
ACAACGGAGATGTTGAAGTTGTCAAGAGAGAGCAACTCGATTTGGGCAGAGCCACTGGCCCGAAGCCTGA
CTCCAGCCACTTTATTTCGGGCTCAGCCAGTGAGAAGGAGGTCATAGCCACAGAAGATGTGGCAAGCTTG
TCCTCTCCCACACTCCCTTCCTCATCTCTCTCCCACGACCGGGCAGTCTCTTCCAAAGCCACGTTCTCAT
CAATGTCTGGTTTGGATTCAGTGTCTGACTCTGGAGAAGGAAGAGGCTCACCATTGAGGGAAGTTTCCAG
GTCCCTGGATCAGTTCAGCGATATGAGAGTCAGCATAAACCAGACGCCCGGGAACAAACCTGTCTTTGGG
TTTACGATAAAATGGGATATTTCTGGGATCTTCGTAGCATCAGTCGAACAAGGTAGCCCAGCAGAATTTT
CTCAGCTGCAGGTAGATGATGAAATTCTTGCCATCAATAACACCAAGTTTTCATATAAGGATACAAAAAA
GTGGGAGGAAGTTATGGCAAACGCCCAAGAAACTGGAAACTTAGTGATGGACGTCCGGCGTTACGGAAAG
TCTGGTTCATCTGAAACAAAGTGGATCGATACAACATCAGGAATTTACAACTCAGACAAGTCTTCAAGTT
TATCAGTCACAACTGATTTCTCTGAAAGCCTTCAGAGTCCTTATACTGAATCCAAAGAAGTCAATGGAAT
TCACGAGGAAAGTAACCCCTTTGATTCAAAAGCATCAGAATCCATTTCTTTGAAAAATTTAAAAAGGCGA
TCACAATTTTTTGAACAAGGAAGCTCGGATTCTGTGGCCCCCGATCTTCCAGTTCCAACCCTCAGTGCCC
CGAGTCGCTGGGCTTGGGATCAAGAGGAGGAGAGACGGAGGCAGGAGCGGTGGCAGAAAGAGCAAGATCG
CCTATTGCAGGAAAAATACCAGCGTGAGCAGGAGAAGCTGAGGGAGGAGTGGCAGAGAGCCCAACAGGAG
GCGGAGAGAGAGAATTCCAAGTACCTGGATGAGGAGCTGATGGTCCTAAATTCCAACAGCATTTCTCTGA
CCTCCCGGGAGCCTGTGGCCGCCACCTGGGAAGCCACGTGGAGTGAAGGGTCCAAGTCTCTGGACAGCGA
AGGCACCCGAGCGGGAGAGGAGGACAGGGGACAGCTGGAAGACGATGCTGTGTATGAGGACCAAAGTCAG
AAGCTGCAGGAACTTGAGCAGGAGAAGAAACGGAAGGAGCAAGAGGCTCAGGAAGAGGAGCGCCGCAAGC
AGCGGGAGGCCCAGGCCTGGGCAGAGGCAGAAGCTAAGGCTTGGGCGGAGGCCCAGGCTCGGGCAGAGGC
AGAAGCTAAGGCTCGGGCGGAGGCCCAGGCCCGGGCAGAGGCTGAGGCTCAAAAACGAGCTGAAGCTCAG
AAGCTCCAGGCAGAGAGGGAACGTGAAACGTCCGTCAAAATATACCAGTACCGAAGGCCCATTGATTCCT
ACGACCTACCAAAGAGAGAAGACGACACTTCAGGGATGCTTCCAACTGACAGGAGTAAATCAAGATCTAC
TACGGAACTAAATGACCCCCTCATAGAGAAAAATGGAAGCAGCAAATATTCAGAGAGAATTGGGGCCACT
AGCTTTTCACATAGGAGTTCTAAGAAGGATCAAGCCCCCTCAGAAGCAGAGTTGGAGAGACAGCAAATCC
TTCAGGAAATGAGGAAGAGAACATCTCTCCACAATGACAACAGCTGGATCCGACAGCGCAGCGCCAGTGT
GAACAAGGAGCCCATCTGCCTGCCTGGGATCATGAGGAGAGGGGAGTCTCTGGACAATCTGGATTCCCAG
CGGCCGGGTTCTTGGAGGCAGTCCCCTTGGCACAGCCAGCCTGCCGGGGTCTATGCGTCTTCCTCTGTCC
AGGACTTCAGTCGCCCCCCACCTCAGCTGTTGTCTACATCAAACCGTGCCTACATGCGGAACCCATCCTC
TGCGGTGCCACCTCCAGCCGGCTCTGTGAAGACCTCCCCAGGGTCTCCCTCTCCACGCAGCCATTCCCCT
TCCATGTCACAGTCAGGCTCTCAGCTACGGAATAGGTCAGTGAGTGGGAAGCGTGTGTGCTCCTACTGTA
ATAACATTCTGGGCAAAGGAGCCGCCATGATCATCGAGACCCTGGGTCTTTCTTATCATTTACATTGTTT
TAAGTGTGTCTCCTGTGGGTGTGACCTCGGAGGCTCTTCCTCAGGAGCTGAAGTCAGAATCCGAAACCAC
CAACTCTACTGCAATGACTGCTATCTCCGATTCAAATCTGGACGGCCAACCGCCATGTGA

Translation (1699 aa):
MEGMEDAEADCSVAFAEAQRWVEAVTEKNFETTDFRASLENGVLLCDLINKLKPGVVKKINRLSTPIAGL
DNINVFLRACEQIGLKEAQLFHPGDLQDLSNRVTVKQEETDRRLKNVLITLYWLGRKAQSNPYYNGPYLN
LKAFETLLGQALTKALEDSSCLKRSGRDSGYGDIWCPDRGEFPAPPGSHRREDSFESLDSLGSRSLTSCS
SDFTLRVGKEGCESDIDWEFTFKMQDYNKDDMSYRRISAIEPKSALPFNRFLPNKSKQPSYVPAPLRKKR
PDKHEDNRRSWASPVYTETDGTFSSTQRRTWGPKMETWHTVQETSTSSWCVEEEEEKLTRMPNIVKDDLY
VRKLSPVMPSPGSSFDQFLPKCWTPEDMNWKKIKRETYKPWYKEFQGFSQFLLLQALQTYSDDILSSETS
VKLDPTSGPRLITRRKNRSPAPGYRAHDLELPALDPDLENDDFFVRKTGAFHANPCVLRAFEDFRSFSEP
DDAVERDIILQCREGELVLPDLEKDDMIVRRIPAQKKEVPLSGAPDRYQPVPFPEPWTLPPEIQAKFLSV
LERTRPPKEQSSGCRVLVPSYRQKKDDMLARKIQSWKLGTAVPPISFKPGPCSEADLQKWEAIWEASRLR
HRKRLMVERLFQKIYGENGSKSMSDVSAEDVQNLRQVRYEEMQKIKSQLKEQDQKWQDDLAKWKNRRKSY
TSDLQKKKEEREEIEKQALEKSDRSSKTFREMLQDRESRGSTVTSWRRTYSSDDILDDGVLPPTVTLSET
SYQSERLEDEARAHPAEMPKEDSTTFANREDSVVAETQLASHSPEEQRLAPSPSEEPRQASGSSAEPHQA
PLLSTEPRRTPLPSEEPHQASLSSTLQRPSSLSSQQSWSTRAESTRISASLPRSYQRTDTARLTSVVTAR
PFGTSSRGISSLPRSYTMDDGWKYNGDVEVVKREQLDLGRATGPKPDSSHFISGSASEKEVIATEDVASL
SSPTLPSSSLSHDRAVSSKATFSSMSGLDSVSDSGEGRGSPLREVSRSLDQFSDMRVSINQTPGNKPVFG
FTIKWDISGIFVASVEQGSPAEFSQLQVDDEILAINNTKFSYKDTKKWEEVMANAQETGNLVMDVRRYGK
SGSSETKWIDTTSGIYNSDKSSSLSVTTDFSESLQSPYTESKEVNGIHEESNPFDSKASESISLKNLKRR
SQFFEQGSSDSVAPDLPVPTLSAPSRWAWDQEEERRRQERWQKEQDRLLQEKYQREQEKLREEWQRAQQE
AERENSKYLDEELMVLNSNSISLTSREPVAATWEATWSEGSKSLDSEGTRAGEEDRGQLEDDAVYEDQSQ
KLQELEQEKKRKEQEAQEEERRKQREAQAWAEAEAKAWAEAQARAEAEAKARAEAQARAEAEAQKRAEAQ
KLQAERERETSVKIYQYRRPIDSYDLPKREDDTSGMLPTDRSKSRSTTELNDPLIEKNGSSKYSERIGAT
SFSHRSSKKDQAPSEAELERQQILQEMRKRTSLHNDNSWIRQRSASVNKEPICLPGIMRRGESLDNLDSQ
RPGSWRQSPWHSQPAGVYASSSVQDFSRPPPQLLSTSNRAYMRNPSSAVPPPAGSVKTSPGSPSPRSHSP
SMSQSGSQLRNRSVSGKRVCSYCNNILGKGAAMIIETLGLSYHLHCFKCVSCGCDLGGSSSGAEVRIRNH
QLYCNDCYLRFKSGRPTAM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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