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Report for CCDS37050.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37050.1 Public Mus musculus 15 Retreg1 23 108 98 CCDS HistoryNCBI Gene:66270Re-query CCDS DB by CCDS ID:37050.1Re-query CCDS DB by GeneID:66270See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37050.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022881.14 ENSMUSP00000022881.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022881.14Link to Ensembl Protein Viewer:ENSMUSP00000022881.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022881Re-query CCDS DB by Protein ID:ENSMUSP00000022881
Original member Current member NCBI NM_001034851.2 NP_001030023.1 Accepted alive Link to Nucleotide Sequence:NM_001034851.2Link to Protein Sequence:NP_001030023.1Re-query CCDS DB by Nucleotide ID:NM_001034851Re-query CCDS DB by Protein ID:NP_001030023Link to BLAST:NP_001030023.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001030023.1 480 Q8VE91-4 480 100% 0 0

Chromosomal Locations for CCDS 37050.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 25843344 25843612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 25889481 25889587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 25895113 25895143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 25964224 25964350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 25966633 25966717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 25968407 25968544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 25969796 25969860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 25970098 25970224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 25971553 25972046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1443 nt):
ATGGCGAGCCCGGCGCCCGAGGAGCACGCCACACAAGGATGCCCGGCTACCGAGGAGCAGCCGCCGCGGC
CT
GGAGTTCCCGGAGAGGAAGCAGGGCCAGAGGGCGCGGGGCCGCAGGTGGAGGAGGCCGCCGGGAGGGT
G
GCCGCCGCCCTGACCTGGCTGCTCGGGGAACCCGTGCTGTGGCTGGGCTGGCGCGCAGACGAGCTCCTG
AGC
TGGAAGAGGCCGCTGCGCAGCCTGCTCACCTTCCTGGGTGCCAACCTGCTGTTCTGGTTCCTTGCCT
TG
ACTCCTTGGAGAGTGTATCACCTCATTTCCGTCATGATTCTTGGGCGTGTTATCATGCAGATCATCAA
G
GAAATGGTTTTGTCCAGGACAAGAGGTGCCCAGCTGTGGAGAAGCCTCACTGAAAGCTGGGAAGTCATC
AAT
TCCAAGCCAGATGAAAGAGCCAGACTGAGCCAGTGCATTGCAGAATCATGGATGAATTTCAGCATGT
TT
CTTCAAGAAATGTCTCTTTTTAAACAGCAGAGTCCTGGCAAGTTTTGCCTCCTGGTCTGCAGTGTGTG
C
ACATTTTTTACAATCTTGGGAAGTTACATTCCTGGGGTCATACTCAGCTACCTTCTGTTACTGTTTGCT
TTT
TTGTGTCCACTGTTTAAATGTAATGATATTGGACAAAAAATATACAGCAAAGTCAAGTCCATTCTAT
TA
AAACTAGATTTTGGAATTGGAGAATATATTAACCAGAAGAAACGTGAGAGATCTGAAGCAGATAAAGA
A
AAAAGTCACAAGGATGACAGTGAATTAGACTTTTCAGCTCTTTGTCCTAAGATTAGCCTCACAGTTGCT
GCC
AAAGAGTTATCTGTGTCAGACACAGATGTGTCAGAAGTCTCTTGGACTGACAATGGGACCTTCAACC
TT
TCAGAGGGGTACACTCCGCAGACAGACACTTCTGACGATCTTGACCGGCCCAGTGAGGAAGTTTTCTC
T
CGAGATCTTTCAGATTTTCCATCTCTGGAAAATGGGACGGGAACAAATGATGAAGATGAATTAAGCCTG
GGC
TTACCCACAGAGCTCAAGAGAAAGAAGCAGCAGTTGGATAGTGCTCACAGACCAAGCAAAGAACGGC
AG
TCGGCAGCTGGCCTCTCACTTCCTCTCAAGAGCGACCAAGCCCTTCACTTGATGAGCAACCTGGCTGG
G
GATGTCATCACAGCCGCCATGACGGCTGCCATCAAAGACCAGCTAGAAGGAGCCCGGCAGGCACTCACT
CAG
GTGGCGCCCACTGCGGGAGAGGACACAGACACTGAGGAGGGGGATGACTTTGAACTACTTGACCAGG
CA
GAGCTAGATCAAATTGAGAGTGAGCTGGGACTAACACAAGACCAAGGGGCAGAAGCCCAGCAAAGTAA
G
AAATCCTCAGGCTTCCTCTCCAATCTGCTTGGAGGCCATTAA


Translation (480 aa):
MASPAPEEHATQGCPATEEQPPRPGVPGEEAGPEGAGPQVEEAAGRVAAALTWLLGEPVLWLGWRADELL
S
WKRPLRSLLTFLGANLLF
WFLALTPWRVYHLISVMILGRVIMQIIKEMVLSRTRGAQLWRSLTESWEVI
N
SKPDERARLSQCIAESWMNFSMFLQEMSLFKQQSPGK
FCLLVCSVCTFFTILGSYIPGVILSYLLLLFA
F
LCPLFKCNDIGQKIYSKVKSILLKLDFGIGEYINQKKRERS
EADKEKSHKDDSELDFSALCPKISLTVA
A
KELSVSDTDVSEVSWTDNGTFNLSEGYTPQTDTSD
DLDRPSEEVFSRDLSDFPSLENGTGTNDEDELSL
G
LPTELKRKKQQLDSAHRPSKERQSAAGLSLPLKSDQALHLMSNLAGDVITAAMTAAIKDQLEGARQALT
Q
VAPTAGEDTDTEEGDDFELLDQAELDQIESELGLTQDQGAEAQQSKKSSGFLSNLLGGH




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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