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Report for CCDS37057.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37057.1 Public Mus musculus 15 Rpl30 23 108 98 CCDS HistoryNCBI Gene:19946Re-query CCDS DB by CCDS ID:37057.1Re-query CCDS DB by GeneID:19946See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37057.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000009039.5 ENSMUSP00000009039.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000009039.5Link to Ensembl Protein Viewer:ENSMUSP00000009039.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000009039Re-query CCDS DB by Protein ID:ENSMUSP00000009039
Original member Current member EBI ENSMUST00000079735.11 ENSMUSP00000106014.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079735.11Link to Ensembl Protein Viewer:ENSMUSP00000106014.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000079735Re-query CCDS DB by Protein ID:ENSMUSP00000106014
Original member NCBI NM_001163485.1 NP_001156957.1 Updated not alive Link to Nucleotide Sequence:NM_001163485.1Link to Protein Sequence:NP_001156957.1Re-query CCDS DB by Nucleotide ID:NM_001163485Re-query CCDS DB by Protein ID:NP_001156957
Current member NCBI NM_001163485.2 NP_001156957.1 Accepted alive Link to Nucleotide Sequence:NM_001163485.2Link to Protein Sequence:NP_001156957.1Re-query CCDS DB by Nucleotide ID:NM_001163485Re-query CCDS DB by Protein ID:NP_001156957Link to BLAST:NP_001156957.1
Original member NCBI NM_009083.4 NP_033109.1 Updated not alive Link to Nucleotide Sequence:NM_009083.4Link to Protein Sequence:NP_033109.1Re-query CCDS DB by Nucleotide ID:NM_009083Re-query CCDS DB by Protein ID:NP_033109
Current member NCBI NM_009083.5 NP_033109.1 Accepted alive Link to Nucleotide Sequence:NM_009083.5Link to Protein Sequence:NP_033109.1Re-query CCDS DB by Nucleotide ID:NM_009083Re-query CCDS DB by Protein ID:NP_033109Link to BLAST:NP_033109.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156957.1 115 P62889 115 100% 0 0
NP_033109.1 115 P62889 115 100% 0 0

Chromosomal Locations for CCDS 37057.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 34440555 34440604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34441232 34441362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34442635 34442780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34443025 34443045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (348 nt):
ATGGTGGCCGCAAAGAAGACGAAAAAGTCTCTGGAGTCGATCAACTCTAGGCTCCAACTTGTTATGAAAA
GTGGGAAGTACGTGCTGGGCTACAAGCAGACTCTGAAGATGATCAGACAAGGCAAAGCGAAGTTGGTTAT
CCTTGCCAACAACTGTCCAGCTTTGAGGAAATCTGAAATAGAGTACTATGCCATGTTGGCTAAAACTGGG
GTCCATCACTACAGTGGCAATAATATTGAACTGGGCACAGCGTGTGGAAAATACTACAGAGTATGCACAC
TGGCTATCATTGACCCAGGTGATTCTGATATTATTAGAAGCATGCCAGAACAGACTGGTGAGAAGTAA

Translation (115 aa):
MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTG
VHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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