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Report for CCDS37232.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37232.1 Public Mus musculus 15 Hnrnpa1 23 108 98 CCDS HistoryNCBI Gene:15382Re-query CCDS DB by CCDS ID:37232.1Re-query CCDS DB by GeneID:15382See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37232.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036004.15 ENSMUSP00000042658.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036004.15Link to Ensembl Protein Viewer:ENSMUSP00000042658.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000036004Re-query CCDS DB by Protein ID:ENSMUSP00000042658
Original member Current member EBI ENSMUST00000230489.1 ENSMUSP00000154865.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000230489.1Link to Ensembl Protein Viewer:ENSMUSP00000154865.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000230489Re-query CCDS DB by Protein ID:ENSMUSP00000154865
Original member NCBI NM_001039129.4 NP_001034218.1 Updated not alive Link to Nucleotide Sequence:NM_001039129.4Link to Protein Sequence:NP_001034218.1Re-query CCDS DB by Nucleotide ID:NM_001039129Re-query CCDS DB by Protein ID:NP_001034218
Current member NCBI NM_001039129.5 NP_001034218.1 Accepted alive Link to Nucleotide Sequence:NM_001039129.5Link to Protein Sequence:NP_001034218.1Re-query CCDS DB by Nucleotide ID:NM_001039129Re-query CCDS DB by Protein ID:NP_001034218Link to BLAST:NP_001034218.1

Chromosomal Locations for CCDS 37232.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 103240514 103240528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103241080 103241196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103241446 103241592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103241903 103242113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103242206 103242298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103242380 103242472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103242644 103242718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103242922 103243080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103243625 103243780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103243959 103244014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGTCTAAGTCCGAGTCTCCCAAGGAGCCAGAACAGCTGCGGAAGCTCTTCATCGGAGGGCTGAGCTTCG
AAACAACCGACGAGAGTCTGAGGAGCCATTTTGAGCAATGGGGAACACTAACAGACTGTGTGGTAATGAG
AGATCCAAACACCAAGAGATCCAGGGGCTTTGGGTTTGTCACATATGCCACTGTGGAAGAAGTGGATGCT
GCCATGAATGCAAGACCACACAAGGTGGATGGAAGAGTTGTGGAACCTAAGAGAGCTGTCTCAAGAGAAG
ATTCTCAGCGACCAGGTGCCCACTTAACTGTGAAAAAGATCTTTGTTGGTGGTATTAAAGAAGACACTGA
AGAACATCACCTACGAGATTATTTTGAGCAGTATGGGAAGATTGAAGTGATAGAAATTATGACTGACAGA
GGCAGTGGGAAAAAGAGGGGCTTTGCTTTTGTTACCTTTGATGACCATGACTCTGTGGATAAGATTGTTA
TTCAGAAATACCATACTGTGAATGGCCACAACTGTGAAGTAAGAAAGGCTCTGTCGAAGCAAGAGATGGC
TAGTGCTTCATCCAGTCAGAGAGGTCGCAGTGGTTCTGGAAACTTTGGTGGTGGTCGTGGAGGCGGTTTT
GGTGGCAATGACAATTTTGGTCGAGGAGGGAACTTCAGTGGTCGTGGTGGCTTTGGTGGCAGCCGTGGTG
GTGGTGGATATGGTGGCAGTGGGGATGGCTATAATGGATTTGGCAATGATGGTGGTTATGGAGGAGGCAG
CCCTGGTTACTCTGGAGGAAGCAGAGGCTATGGAAGTGGTGGACAGGGTTATGGAAACCAGGGCAGTGGC
TATGGCGGGAGTGGCAGCTATGACAGCTATAACAACGGAGGAGGCGGAGGCGGCTTTGGCGGTGGTAGTG
GAAGCAATTTTGGAGGTGGTGGAAGCTACAATGATTTTGGCAATTACAACAATCAGTCTTCCAATTTTGG
GCCGATGAAGGGAGGAAACTTTGGAGGCAGGAGCTCTGGCCCTTATGGTGGTGGAGGCCAGTACTTTGCT
AAACCACGGAACCAAGGTGGCTATGGCGGTTCCAGCAGCAGCAGTAGCTATGGCAGTGGCAGGAGGTTCT
AA

Translation (373 aa):
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA
AMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR
GSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGF
GGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGGSPGYSGGSRGYGSGGQGYGNQGSG
YGGSGSYDSYNNGGGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFA
KPRNQGGYGGSSSSSSYGSGRRF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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