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Report for CCDS37261.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37261.1 Public Mus musculus 16 Pdxdc1 23 108 98 CCDS HistoryNCBI Gene:94184Re-query CCDS DB by CCDS ID:37261.1Re-query CCDS DB by GeneID:94184See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37261.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115804.8 ENSMUSP00000111471.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115804.8Link to Ensembl Protein Viewer:ENSMUSP00000111471.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115804Re-query CCDS DB by Protein ID:ENSMUSP00000111471
Original member Current member NCBI NM_001039533.2 NP_001034622.1 Accepted alive Link to Nucleotide Sequence:NM_001039533.2Link to Protein Sequence:NP_001034622.1Re-query CCDS DB by Nucleotide ID:NM_001039533Re-query CCDS DB by Protein ID:NP_001034622Link to BLAST:NP_001034622.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034622.1 710 Q99K01-3 710 100% 0 0

Chromosomal Locations for CCDS 37261.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 13834821 13834846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13837043 13837147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13838096 13838192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13838302 13838394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13839232 13839353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13839637 13839755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13840287 13840458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13843771 13843876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13845335 13845423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13847726 13847789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13854395 13854445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13857377 13857502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13858857 13858958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13859110 13859158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13859954 13860038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13869803 13869881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13872455 13872523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13875978 13876167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13879426 13879572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13881878 13881958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13884566 13884631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13887697 13887770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13902915 13902935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2133 nt):
ATGGACGCGTCCCTGGAGAAGATAGCAGACCCTACATTAGCTGAAATGGGAAAAAACTTGAAAGAGGCGA
TGCGGATGCTGGAGAAGAGCCCGAGAAGAACAGAGGAGGAAAATGGAAAGAAGCCAGTATCTGAGGATAT
TCCAGGGCCACTCCAAGGCAGTGGACAAGATATGGTGAGCATCCTCCAGTTAGTTCAAAATCTGATGCAT
GGAGATGAAGATGAGGAGCCCCAGAGCACCCGAATCCAAAATATTGGAGAGCAAGGTCACATGGCTTTGT
TGGGTCATAGCCTCGGTGCCTATATTTCAACTCTGGATAAAGAGAAGCTGAGAAAGCTCACAACCAGGAT
ACTTTCAGACACTACCTTATGGCTACGCCGGATTTTCAGGTACGAAAATGGATGTGCATATTTCCACGAG
GAAGAGAGGGAAGGACTTGCTAAGATCTGTAGGCTTGCCATTCATTCTCGCTATGAAGACTTTGTTGTAG
ATGGATTCAACGTGTTATATAACAAAAAGCCTGTCATATATCTTAGTGCTGCCGCTAGACCTGGCCTGGG
CCAATACCTTTGTAATCAGCTTGGCTTACCCTTCCCCTGCCTGTGCCGTGTGCCCTGTAACACTATGTTT
GGATCCCAGCATCAGATGGACGTTGCCTTTCTCGAGAAACTGATCAAAGATGACGTAGAAAGAGGAAGAC
TGCCCTTGCTGCTTGTTGCAAATGCTGGAACTGCAGCAGTTGGACACACAGACAAGATTGGACGTTTGAA
GGAACTCTGTGAGCAGTACGGCATTTGGCTTCATGTGGAAGGTGTGAATCTGGCAACATTGGCTCTAGGT
TATGTCTCCTCATCTGTGCTGGCTGCAACCAAGTGCGATAGCATGACACTAACTCCTGGCCTATGGCTAG
GTTTGCCAGCTGTTCCTGCAGTGACACTCTACAAACATGACGATCCTGCCTTGACACTAGTTGCTGGTCT
TACATCAAATAAGCCTGCAGACAAACTCCGAGCCCTACCACTCTGGTTGTCTCTACAGTACTTGGGACTT
GATGGCATTGTGGAGAGAATAAAGCATGCTTGTCATCTGAGTCAACGGTTGCAAGAAAGTTTGAAGAAAG
TGGACCACATCAAAATCTTGGTGGAAGATGAGCTCAGTTCTCCAGTAGTGGTGTTCAGGTTTTTCCAGGA
ATTACCAGCCTCAGATTCAGCGTTTAAAGCTGTTCCTGTATCCAACATAGCACCTGCAGCAGTTGGCCGG
GAAAGACACTCCTGTGATGCACTGAACCGCTGGTTGGGTGAACAGTTGAAACAGTTGGTGCCTCAGTGTG
GCCTCACTGTCATAGACCTGGAGGTAGATGGCACATGTGTTCGGTTCAGCCCTCTGATGACAGCAGAAGG
GTTAGGAACTCGAGGAGAGGATGTCGATCAGCTCATTACCTGCATCCAAAGCAAACTACCAGTCCTGACC
TGCACACTACAGCTTCGGGAAGAATTCAAGCAGGAGGTAGAGGGGACAGCAGGGCTCCTGTATGTTGATG
ACCCCAACTGGCCTGGAATCGGGGTTGTCAGGTATGAGCATGCGAATGATGATGACACCAGTTTGAAATC
TGATCCAGAGGGGGAAAAAATACACACTGGACTTCTGAAAAAGTTAAATGAACTGGAATCTGACCTCACA
TTTAAAATAGGCCCTGAGTACAAAAGCATGAAGAGCTGCATTTACATTGGCATGGCAAGTGATGATGTGG
ACGTTTCTGAGCTAGTGGAGACCATTGCAGTCACAGCCCGGGAAATTGAGGAGAACTCAAGGCTTCTAGA
GAACATGACAGAAGTTGTTCGGAAGGGAATTCAGGAGGCACAGGTTCAGCTACAGAAGGCAAATGAGGAG
CGGCTTCTGGAAGAGGGAGTGTTGCGGCAAATCCCTGTAGTAGGATCCGTGCTGAATTGGTTTTCTCCAG
TCCAGGCTTCACAGAAGGGAAGAAGTTTTAACTTAACAGCAGGCTCTCTGGAGTCCACAGAATACACCTA
TGTCCACAAAGTACAAGGTACTGGGGTGACACCACCTCCCACACCCCTAGGCACTCGAAGCAAACAGAGG
CTTCCAGATGGGAACCAGGGTGCAGAGACTTAA

Translation (710 aa):
MDASLEKIADPTLAEMGKNLKEAMRMLEKSPRRTEEENGKKPVSEDIPGPLQGSGQDMVSILQLVQNLMH
GDEDEEPQSTRIQNIGEQGHMALLGHSLGAYISTLDKEKLRKLTTRILSDTTLWLRRIFRYENGCAYFHE
EEREGLAKICRLAIHSRYEDFVVDGFNVLYNKKPVIYLSAAARPGLGQYLCNQLGLPFPCLCRVPCNTMF
GSQHQMDVAFLEKLIKDDVERGRLPLLLVANAGTAAVGHTDKIGRLKELCEQYGIWLHVEGVNLATLALG
YVSSSVLAATKCDSMTLTPGLWLGLPAVPAVTLYKHDDPALTLVAGLTSNKPADKLRALPLWLSLQYLGL
DGIVERIKHACHLSQRLQESLKKVDHIKILVEDELSSPVVVFRFFQELPASDSAFKAVPVSNIAPAAVGR
ERHSCDALNRWLGEQLKQLVPQCGLTVIDLEVDGTCVRFSPLMTAEGLGTRGEDVDQLITCIQSKLPVLT
CTLQLREEFKQEVEGTAGLLYVDDPNWPGIGVVRYEHANDDDTSLKSDPEGEKIHTGLLKKLNELESDLT
FKIGPEYKSMKSCIYIGMASDDVDVSELVETIAVTAREIEENSRLLENMTEVVRKGIQEAQVQLQKANEE
RLLEEGVLRQIPVVGSVLNWFSPVQASQKGRSFNLTAGSLESTEYTYVHKVQGTGVTPPPTPLGTRSKQR
LPDGNQGAET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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