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Report for CCDS37328.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37328.1 Public Mus musculus 16 Cstdc4 23 108 98 CCDS HistoryNCBI Gene:433016Re-query CCDS DB by CCDS ID:37328.1Re-query CCDS DB by GeneID:433016See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37328.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114858.1 ENSMUSP00000110508.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114858.1Link to Ensembl Protein Viewer:ENSMUSP00000110508.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114858Re-query CCDS DB by Protein ID:ENSMUSP00000110508
Original member Current member NCBI NM_001082547.1 NP_001076016.1 Accepted alive Link to Nucleotide Sequence:NM_001082547.1Link to Protein Sequence:NP_001076016.1Re-query CCDS DB by Nucleotide ID:NM_001082547Re-query CCDS DB by Protein ID:NP_001076016Link to BLAST:NP_001076016.1

Chromosomal Locations for CCDS 37328.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 36184260 36184325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36186364 36186465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36187914 36188039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (294 nt):
ATGATGCCTGGAGGCTTGTCACGGGCCAGATCTGCCACACCAGAAATCCAGGAGATTGCTGATAAGGTTA
AGTCACTGCTTGAAGAGAAAACCAATGAGAAATATGAAGTGTTCAAAGCTGTTGAGTATAAATCTCAAGT
CGTCGCTGGACAAAATTACTTCATTAAGATGGATGTTGGTGGTGGTTGTTTCCTCCACATAAAGGTCTTC
AAAGGGATTTCTGGAGAAAATGTTTTAGAACTTCATGGTTACCAGACTAACAAAACCAGGAAAGACGAGC
TGTCCTACTTCTAA

Translation (97 aa):
MMPGGLSRARSATPEIQEIADKVKSLLEEKTNEKYEVFKAVEYKSQVVAGQNYFIKMDVGGGCFLHIKVF
KGISGENVLELHGYQTNKTRKDELSYF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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