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Report for CCDS37331.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37331.1 Public Mus musculus 16 Stfa1 23 108 98 CCDS HistoryNCBI Gene:20861Re-query CCDS DB by CCDS ID:37331.1Re-query CCDS DB by GeneID:20861See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37331.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000232150.1 ENSMUSP00000156337.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232150.1Link to Ensembl Protein Viewer:ENSMUSP00000156337.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232150Re-query CCDS DB by Protein ID:ENSMUSP00000156337
Original member Current member NCBI NM_001082543.1 NP_001076012.1 Accepted alive Link to Nucleotide Sequence:NM_001082543.1Link to Protein Sequence:NP_001076012.1Re-query CCDS DB by Nucleotide ID:NM_001082543Re-query CCDS DB by Protein ID:NP_001076012Link to BLAST:NP_001076012.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001076012.1 97 P35175 97 100% 0 0

Chromosomal Locations for CCDS 37331.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 36277196 36277261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36280466 36280567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36285170 36285295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (294 nt):
ATGAGTCTTGGAGGTGTTTCAGAGGCAAGCCGTGCCACACCAGAAATCCAGATGATTGCTAACAAGGTCA
GA
CCTCAGCTTGAAGCAAAAACCAATAAGAAATATGAAAAATTCGAAGCCGTTGAGTATAAAACTCAAGT
C
GTCGCTGGAGAAAATATCTTCATTAAGATGGATGTAGGTCATGGTTGTTTCATTCACATAAAAGTCTTC
AAT
GGACCTACTGGAAAAGATAATTATGAACTTCATGGTTACCAGACTGACAAAACCATGGATGAAGAGC
TG
ACCTACTTCTAA


Translation (97 aa):
MSLGGVSEASRATPEIQMIANKVRPQLEAKTNKKYEKFEAVEYKTQVVAGENIFIKMDVGHGCFIHIKVF
N
GPTGKDNYELHGYQTDKTMDEELTYF




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser