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Report for CCDS37581.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37581.1 Public Mus musculus 17 H2-DMb1 23 108 98 CCDS HistoryNCBI Gene:14999Re-query CCDS DB by CCDS ID:37581.1Re-query CCDS DB by GeneID:14999See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37581.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114232.3 ENSMUSP00000109870.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114232.3Link to Ensembl Protein Viewer:ENSMUSP00000109870.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114232Re-query CCDS DB by Protein ID:ENSMUSP00000109870
Original member Current member NCBI NM_010387.3 NP_034517.2 Accepted alive Link to Nucleotide Sequence:NM_010387.3Link to Protein Sequence:NP_034517.2Re-query CCDS DB by Nucleotide ID:NM_010387Re-query CCDS DB by Protein ID:NP_034517Link to BLAST:NP_034517.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034517.2 261 P35737 261 97.7011% 0 6

Chromosomal Locations for CCDS 37581.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34153399 34153453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34155433 34155714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34157246 34157530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34159344 34159460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34159629 34159664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34159929 34159939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (786 nt):
ATGGCTGCACTCTGGCTGCTGCTGCTGGTCCTCAGTCTGGACTGTATGGGGGCAGGTGGCTTTGTGGCTC
ATGTGGAAAGCACGTGCGTGCTGGATGATGCTGGGACCCCACAGGACTTCACATACTGTGTTTCCTTCAA
CAAAGATCTGCTGGCCTGCTGGGATCCAGATGTGGGAAAAATAGTCCCCTGTGAATTTGGGGTGCTGTAT
CCATGGGCCGAAAATTTTTCAAGGATCCTCAACAAAGAAGAGAGCCTTCTCCAGCGTTTGCAAAACGGGC
TTCTGGACTGTGCCTCCCACACCCAGCCCTTCTGGAATGCGCTGACCCACAGAACGAGAGCGCCATCTGT
CCGAGTAGCCCAAACCACACCTTTTAACACAAGGGAGCCGGTGATGCTGGCCTGCTACGTCTGGGGCTTC
TATCCAGCGGATGTGACCATCACATGGATGAAGAATGGGCAGCTTGTCCCTTCCCACAGCAACAAGGAGA
AGACGGCTCAGCCCAATGGAGACTGGACATACCAGACAGTCTCCTACCTAGCCCTAACCCCTTCCTACGG
GGACGTCTACACCTGCGTGGTTCAGCACAGCGGGACCTCTGAGCCCATCCGAGGGGACTGGACACCTGGG
CTGTCCCCCATCCAGACAGTGAAGGTCTCTGTGTCTGCAGCCACCCTGGGCCTGGGCTTCATCATCTTCT
GTGTTGGCTTCTTCAGATGGCGCAAGTCTCATTCCTCCAGCTACACTCCTCTCTCTGGATCCACCTACCC
GGAAGGACAGCATTAG

Translation (261 aa):
MAALWLLLLVLSLDCMGAGGFVAHVESTCVLDDAGTPQDFTYCVSFNKDLLACWDPDVGKIVPCEFGVLY
PWAENFSRILNKEESLLQRLQNGLLDCASHTQPFWNALTHRTRAPSVRVAQTTPFNTREPVMLACYVWGF
YPADVTITWMKNGQLVPSHSNKEKTAQPNGDWTYQTVSYLALTPSYGDVYTCVVQHSGTSEPIRGDWTPG
LSPIQTVKVSVSAATLGLGFIIFCVGFFRWRKSHSSSYTPLSGSTYPEGQH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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