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Report for CCDS37598.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37598.1 Public Mus musculus 17 H2-Q6 23 108 98 CCDS HistoryNCBI Gene:110557Re-query CCDS DB by CCDS ID:37598.1Re-query CCDS DB by GeneID:110557See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 37598.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113879.3 ENSMUSP00000109511.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113879.3Link to Ensembl Protein Viewer:ENSMUSP00000109511.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000113879Re-query CCDS DB by Protein ID:ENSMUSP00000109511
Original member Current member EBI ENSMUST00000174699.7 ENSMUSP00000134550.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174699.7Link to Ensembl Protein Viewer:ENSMUSP00000134550.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000174699Re-query CCDS DB by Protein ID:ENSMUSP00000134550
Original member Current member NCBI NM_001368741.1 NP_001355670.1 Accepted alive Link to Nucleotide Sequence:NM_001368741.1Link to Protein Sequence:NP_001355670.1Re-query CCDS DB by Nucleotide ID:NM_001368741Re-query CCDS DB by Protein ID:NP_001355670Link to BLAST:NP_001355670.1
Original member Current member NCBI NM_207648.2 NP_997531.1 Accepted alive Link to Nucleotide Sequence:NM_207648.2Link to Protein Sequence:NP_997531.1Re-query CCDS DB by Nucleotide ID:NM_207648Re-query CCDS DB by Protein ID:NP_997531Link to BLAST:NP_997531.1

Chromosomal Locations for CCDS 37598.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35424877 35424940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35425108 35425377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35425571 35425846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35427864 35428139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35428267 35428361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGGCTCTAACAACGCTGCTCTTGCTGGTGGCGGCCGCCCTGACCCTGATCGAGACCCGCGCGGGCCCAC
ACTCGCTGCGGTATTTCCACACTGCTGTGTCCTGGCCCGGCCTCGTGGAGCCCCGGTTCATTATCGTCGG
CTACGTGGACAACAAGCAGTTCGTGCGCTTCGACAGCGACGCGGAAAATCCGAGGATGGAGCCGCGGGCG
CGGTGGATGGAGCAGGAGGGGCCGGAGTATTGGGAGCGGGAGACACAGAAAGCCAAGGGCCATGAGGAGA
GTTTCCGAGTGAGCCTGAGGACCGCACAGAGATACTACAACCAGAGCAAGGGCGGCTCTCACACACTCCA
GTGGATGTATGGCTGTGACGTGGGGTCCGACGAGCGCCTCCTCCGCGGGTACCTGCAGTTCGCCTATGAA
GGCCGCGATTACATCGCCCTGAACGAAGACCTGAAAACCTGGACGGCGGCGGACATGGCTGCACAGATCA
CCCTACACAAGTGGGAGCAGGCTGGTATTGCAGAGAGAGACCGGGCCTACCTGGAGGGCGCTTGCGTGCA
GTCGCTCCGCAGATACCTGCAGCTCCGGAAGGAGACGCTGCTGTGCACAGATCCCCCAAAGGCACATGTG
ACCCATCACCCCAGGTCTTATGGTGCTGTCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCTGACA
TCACCCTGACTTGGCAGTTGAATGGGGAGGAGCTGACCCAGGACATGGAGCTTGTGGAGACCAGGCCTGC
AGGGGATGGAACCTTCCAGAAGTGGGCATCTGTGGTGGTGCCTCTTGGGAAGGAGCAGAATTACACATGC
CATGTGAACCATGAGGGGCTGCCTGAGCCTCTCACCCTGAGATGGGAGCCTCCTCCATCCACTGTCTCCA
ACATGGCGAACGTAGCTATTCTGGTTGTCCTTGTAGCTTGGCCATCATTGGAGCTGTGGTGGATTTTGTG
A

Translation (326 aa):
MALTTLLLLVAAALTLIETRAGPHSLRYFHTAVSWPGLVEPRFIIVGYVDNKQFVRFDSDAENPRMEPRA
RWMEQEGPEYWERETQKAKGHEESFRVSLRTAQRYYNQSKGGSHTLQWMYGCDVGSDERLLRGYLQFAYE
GRDYIALNEDLKTWTAADMAAQITLHKWEQAGIAERDRAYLEGACVQSLRRYLQLRKETLLCTDPPKAHV
THHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTC
HVNHEGLPEPLTLRWEPPPSTVSNMANVAILVVLVAWPSLELWWIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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